Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3597 ATGGCTTCAACTCTGCTGTCTCTGATTACTTTGTTTTTAGCTTTCTCTGCCCATTCTCTGCAGATCATTGAGGCAGAAACAGAACAGCTTAATAATCTCAAGTTGAACTCTCGTATTCTTCAGGAGTCGATTGTTGAACAGATTAATGGAAACCCAAAAGCAGGATGGGAGGCTGCCATGAGTCCTCGTTTCTCCAATTATACAGTTGGACAATTCAAGCGCCTTCTAGGAGTCAAGCAAACACCTAGAAAGGAATTGAGAAGTACCCCCGTCAAAGCTCATCCAGGATCATTGAAATTACCAAATAAGTTTGACGCAAGAACAGCTTGGTTGCATTGTAACACAATTGGAAGAATTCTAGGTGAGTATGGTCACTGTGGTTCTTGTTGGGCATTTGGCGCTGTTGAATCATTATCAGACCGCTTCTGCATTCATTTTGGCATGAATGTGTCTCTCTCTGTTAATGACCTTCTCTCATGCTGTGGATTTTTGTGTGGATCTGGCTGTGATGGGGGTTATCCCCTCAATGCGTGGCAATACCTTGTCCATTATGGTGTTGTCACTGAAGAGTGTGACCCATACTTTGATGAGATTGGCTGTTCTCACCCCGGTTGCGAGCCAGCATATCCAACCCCCACGTGTGTTAGAAAGTGTGTCAATGGTAACCAGCTTTGGAGGGAGTCAAAGCACTATAGTGTTAGTGCATATAGGGTCAGCTCTGATCCCTATGATATAATGGCAGAAGTCTATAACAATGGGCCAGTTGAGGTCTCATTCACGGTTTATGAGGATTTTGCTCACTACAAGTCAGGAGTTTACAAACACGTCACAGGTTACGTAATGGGAGGTCATGCTGTAAAGCTGATTGGATGGGGGACCACCGATGATGGAGAGGACTATTGGCTTCTCGCAAATCAGTGGAATAGAAGTTGGGGTGATGATGGTTACTTCATGATCAGAAGAGGCACAAACGAGTGTGGTATTGAAGATGATGTTGTTGCTGGTTTGCCTTCCACCAAAAACCTCGTAATAGGGGTAGCTGATGTGGACGCAGATGCTGCTGTTTCATTCTGA 1074 0.446 MASTLLSLITLFLAFSAHSLQIIEAETEQLNNLKLNSRILQESIVEQINGNPKAGWEAAMSPRFSNYTVGQFKRLLGVKQTPRKELRSTPVKAHPGSLKLPNKFDARTAWLHCNTIGRILGEYGHCGSCWAFGAVESLSDRFCIHFGMNVSLSVNDLLSCCGFLCGSGCDGGYPLNAWQYLVHYGVVTEECDPYFDEIGCSHPGCEPAYPTPTCVRKCVNGNQLWRESKHYSVSAYRVSSDPYDIMAEVYNNGPVEVSFTVYEDFAHYKSGVYKHVTGYVMGGHAVKLIGWGTTDDGEDYWLLANQWNRSWGDDGYFMIRRGTNECGIEDDVVAGLPSTKNLVIGVADVDADAAVSF 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3597 357 PRINTS Papain cysteine protease (C1) family signature 123 138 IPR000668 GO:0006508|GO:0008234
Dere01g3597 357 PRINTS Papain cysteine protease (C1) family signature 284 294 IPR000668 GO:0006508|GO:0008234
Dere01g3597 357 PRINTS Papain cysteine protease (C1) family signature 300 306 IPR000668 GO:0006508|GO:0008234
Dere01g3597 357 CDD Peptidase_C1A_CathepsinB 101 335 - -
Dere01g3597 357 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 42 329 IPR013128 GO:0008234
Dere01g3597 357 Coils Coil 23 43 - -
Dere01g3597 357 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 282 292 IPR025660 -
Dere01g3597 357 Gene3D Cysteine proteinases 29 343 - -
Dere01g3597 357 FunFam cathepsin B-like protease 2 33 342 - -
Dere01g3597 357 Pfam Peptidase family C1 propeptide 40 82 IPR012599 GO:0004197|GO:0050790
Dere01g3597 357 SUPERFAMILY Cysteine proteinases 46 337 IPR038765 -
Dere01g3597 357 SMART pept_c1 100 336 IPR000668 GO:0006508|GO:0008234
Dere01g3597 357 Pfam Papain family cysteine protease 100 335 IPR000668 GO:0006508|GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3597 Dere-ChrDere01 50297109 50303044 Dispersed/Wgd