Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere01g3595 | ATGTCGATAGCGAAAGAGCCGGAGCAAGTGATGAAGTTGAGGGGAGGATCGGTGCTGGGAAAGAAGACCATTCTGAAGAGCGACCATTTCCCTGGTTGCCAGAACAAACGCTTGTCTCCGCAGATCGAAGGCGCTCCCAATTATCGTCAGGCTGACTCATTACATGTTCACGGTGTTGCAATCCCAACATTTGGTGGGATCCGAAATGTTCTCAAGCATATTGGTGCTCAAAAAGAAGGGAAGAGAGCGCAAGTCCTTTGGATTAACCTTCGTGAGGAACCGGTTGTGTACATTAATGGACGTCCTTTTGTTTTGCGTGATGTGGAAAGACCATTTTCCAATCTTGAGTATACGGGAATAAATAGGGAAAGGGTTGAACAAATGGAAGCTCGTTTGAAAGAAGATATCCTGATGGAAGCAGGAAGATATGGAAATAAGATCCTTGTGACTGATGAACTGCCAGATGGCCAAATGGTGGACCAATGGGAACCAGTGTCATGTAATTCAGTGAAAACACCACTTGAGGTGTATGAGGAATTGCAAGCAGAGGGATACCATGTTGATTATGAACGTGTTCCTATAACTGACGAAAAGTCGCCGAAAGAACTGGATTTTGATTTTTTGGTTCATAAGATTTCTCAAGCTGATGTGAATACAGAGATCATTTTTAATTGTCAAATGGGGCGTGGACGTACTACAACCGGAATGGTCATTGCAACTTTAATTTACCTCAACCGAATTGGAGCTTCAGGTATTCCAAGAAGCAATTCGGTTGGTAAGATTTCTCAGTGTGCCACTAATGTTGCTGAACATTTGCCTAACTCAGAGGAGGCAGTTCGCAGGGGAGAATATGCAGTCATAAGAAGCTTGATACGGGTATTAGAGGGTGGCGTTGAGGGGAAAAGACAAGTGGACAAAGTTATTGATAAGTGTGCCTCAATGCAGAATTTGCGTGAAGCGATTGCCACTTATCGCAACAGCATTCTGCGACAACCAGATGAGAAGAAAAGAGAGTCATCACTTTCTTTTTTTGTAGAGTACTTAGAGAGATACTACTTCTTAATATGTTTTGCTGTATACATTCATTCAGAAAGGGCTGCACTCCGATCCACTTTTGTTGGTCATAGCAGTTTTGCTGACTGGATGAGAGCTAGGCCAGAACTGTACAGTATTATTCGCAGGTTGCTGAGGAGAGATCCAATGGGTGCACTTGAATATTCCAGTTTGAAGCCATCTCTAAAGAAGATAGCTGAATCTACTGATGGCCGCCCTTCTGAGATGGGTGTCGTTGCTGCCTTGAGAAATGGTGAAGTTCTTGGTAGTCAAACTGTTCTAAAAAGTGATCACTGTCCTGGTTGTCAAAACCCAAGTTTACCTGAGAGAGTGGAGGGGGCACCGAACTTCAGAGAAGTTCCTGGGTTTCCAGTTTTTGGTGTGGCAAACCCAACCATCGATGGTATTCGATCTGTCATTCGTAGGATTGGTAGCTCTAAAGGGGGACGCCCAGTACTTTGGCATAATATGAGAGAAGAACCTGTTATATACATCAATGGAAAACCATTTGTTCTCCGCGAACTTGAAAGACCATACAAAAACATGCTGGAGTACACGGGAATTGATCGTGAAAGAGTGGAGAAAATGGAAGCTCGATTAAAAGAAGATATCCTACGGGAAGCTGAACACTATGGCAGTGCAGTATTGGTTATTCATGAAACAGATGATGGGCAAATATTTGATGCCTGGGAGCATGTCACCTCTTATGCGATTCAAACCCCACTTGAAGTTTTTAAAAGCCTGGAGGCTGATGGTTATCCCATTAAGTATGCACGTGTGCCCATCACTGATGGTAAAGCTCCTAAAAGTTCTGACTATGACACAATAGCAGTTAATATTGCATCTTCTCCAAAGGAAACTGCTTTTGTTTTCAATTGTCAGATGGGTAGGGGTAGGACAACCACTGGTACTGTCATAGCTTGCCTTGTTAAACTTCGAATTGATTATGGGAGGCCCATCAAAGTCCTGATTGATGATGTAGCCCAGGAAGAAGTGAATGGTGGTTTCTCAAGTGGAGATGAAACTGGGGGTAACATTAATGCATTAACCTCTGATCCTTCTCTAATAAATATGGATGAGAAACAAAATTGTGGCTTTGGCATAAATGATATCCTCTTGTTATGGAAGATAACAACATTATTTGATAATGGGGTGGAATGCCGGAAGGCCTTAGATACTATTGTTGATAGATGTTCTGCACTTCAAAACATACGCCAAGCTGTTCTGCAATATAGAAGAGTATTCAATCAACAGCATGTTGAGCCTAGAGTAAGGAGGGTAGCATTGAATCGTGGTGCTGAGTACTTGGAACGTTATTTCCGTCTAATTGCTTTTGCAGCATATCTTGGAAGTGAAGCATTTGATGGTTTTTGTGGACAAGGAGAATCCAAAATGACATTTAAAAATTGGTTGCATCAGAGGCCAGAGGTGCAGGCTATGAAATGGAGCATCAGATTGAGACCAGGGCGATTTTTCTCTGTCCCAGAAGGGTTGAGAGCACCACAAGAGTCTCAGCATGGAGATGCAGTAATGGAGGCGATTCTCAAGGGCCGGAATGGTTCTGTTTTGGGGAAAGGCTCCATACTAAAAATGTATTTCTTTCCTGGTCAGAGAACTTCGAGCCACATACAAATACATGGTGCTCCACATGTTTACAAGGTTGATGAATACCCTGTGTATAGCATGGCAACTCCAACCATCTCTGGTGCCAAGGAGATGCTAGGGTATTTAGGTGCTAAGCCTAAAGCAGGAGCTTTAGAAGCCTCAGTTGCTCGAAAAGTTATATTGACTGATCTGAGAGAGGAAGCAGTTGTTTATATCAATGGTACTCCCTTTGTCTGGCGGGAACTAAACAAACCTGTTGATGCACTCAAGCATGTGGGAATCACTGGTCCTGTGGTAGAGCAAATGGAGGCACGACTGAAAGAAGACATAATAGCTGAGGTTAGACAGTCTGGTGGGCGAATGCTGTTACATCGTGAAGAGTATAACCCCTCCACAAATCAGTCTGGTGTTGTTGGATACTGGGAAAATGTTTCAGCAGATGATGTCAGGACACCTGCAGAAGTTTATTCATCTTTAAAAAATGATGGATATGATATTGCCTATCGGAGGATTCCATTAACTAGAGAGAGAGATGCCTTAGCTTCTGATGTAGATGCAATTCAGTATTGTGAAGATGACTCTGCAGGCAGTTACCTTTTTGTATCGCACACAGGTTTTGGTGGAGTTGCATATGCAATGGCGATCATCTGTATTAAACTAGGTGCAGTAATAAACTCATCTAAAACCCCACAACCATTGTTTGGTCCTCACTTATATCCATTGGTTGGAGAGAATATTCCCTCTCGTGCTTCTAATGAAGAGGCACTTAGGATGGGTGACTACCGTGACATATTAAGCCTTACAAGAGTACTTCTACACGGTCCCCAGAGCAAAGCAGATGTTGACATTATTATTGAAAGGTGTGCAGGTGCAGGACATTTGCGGGATGATATTCTTTTTTATAGAAAAGAATTTGAGAAGTTTACTGATGGTGATGATGAGGAACGTGCTCATCTTATGGACATGGGTATCAAGGCTTTGAGGCGGTATTTTTTCCTAATCACATTCAGATCCTATCTTTACTGCACATCTCCTGCCACGATGGAATTTGCTGCATGGATGGATGCAAGACCTGAGCTTGGTCATCTGTGTAGCAATCTCGGAATTGATAAATAA | 3774 | 0.4285 | MSIAKEPEQVMKLRGGSVLGKKTILKSDHFPGCQNKRLSPQIEGAPNYRQADSLHVHGVAIPTFGGIRNVLKHIGAQKEGKRAQVLWINLREEPVVYINGRPFVLRDVERPFSNLEYTGINRERVEQMEARLKEDILMEAGRYGNKILVTDELPDGQMVDQWEPVSCNSVKTPLEVYEELQAEGYHVDYERVPITDEKSPKELDFDFLVHKISQADVNTEIIFNCQMGRGRTTTGMVIATLIYLNRIGASGIPRSNSVGKISQCATNVAEHLPNSEEAVRRGEYAVIRSLIRVLEGGVEGKRQVDKVIDKCASMQNLREAIATYRNSILRQPDEKKRESSLSFFVEYLERYYFLICFAVYIHSERAALRSTFVGHSSFADWMRARPELYSIIRRLLRRDPMGALEYSSLKPSLKKIAESTDGRPSEMGVVAALRNGEVLGSQTVLKSDHCPGCQNPSLPERVEGAPNFREVPGFPVFGVANPTIDGIRSVIRRIGSSKGGRPVLWHNMREEPVIYINGKPFVLRELERPYKNMLEYTGIDRERVEKMEARLKEDILREAEHYGSAVLVIHETDDGQIFDAWEHVTSYAIQTPLEVFKSLEADGYPIKYARVPITDGKAPKSSDYDTIAVNIASSPKETAFVFNCQMGRGRTTTGTVIACLVKLRIDYGRPIKVLIDDVAQEEVNGGFSSGDETGGNINALTSDPSLINMDEKQNCGFGINDILLLWKITTLFDNGVECRKALDTIVDRCSALQNIRQAVLQYRRVFNQQHVEPRVRRVALNRGAEYLERYFRLIAFAAYLGSEAFDGFCGQGESKMTFKNWLHQRPEVQAMKWSIRLRPGRFFSVPEGLRAPQESQHGDAVMEAILKGRNGSVLGKGSILKMYFFPGQRTSSHIQIHGAPHVYKVDEYPVYSMATPTISGAKEMLGYLGAKPKAGALEASVARKVILTDLREEAVVYINGTPFVWRELNKPVDALKHVGITGPVVEQMEARLKEDIIAEVRQSGGRMLLHREEYNPSTNQSGVVGYWENVSADDVRTPAEVYSSLKNDGYDIAYRRIPLTRERDALASDVDAIQYCEDDSAGSYLFVSHTGFGGVAYAMAIICIKLGAVINSSKTPQPLFGPHLYPLVGENIPSRASNEEALRMGDYRDILSLTRVLLHGPQSKADVDIIIERCAGAGHLRDDILFYRKEFEKFTDGDDEERAHLMDMGIKALRRYFFLITFRSYLYCTSPATMEFAAWMDARPELGHLCSNLGIDK | 1257 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere01g3595 | 1257 | Gene3D | Protein tyrosine phosphatase superfamily | 881 | 1114 | IPR029021 | - | |
| Dere01g3595 | 1257 | Gene3D | Protein tyrosine phosphatase superfamily | 23 | 281 | IPR029021 | - | |
| Dere01g3595 | 1257 | Gene3D | Protein tyrosine phosphatase superfamily | 444 | 673 | IPR029021 | - | |
| Dere01g3595 | 1257 | FunFam | Paladin isoform A | 24 | 267 | - | - | |
| Dere01g3595 | 1257 | SMART | PTPlike_phytase_2 | 948 | 1106 | - | - | |
| Dere01g3595 | 1257 | SMART | PTPlike_phytase_2 | 506 | 662 | - | - | |
| Dere01g3595 | 1257 | SMART | PTPlike_phytase_2 | 88 | 243 | - | - | |
| Dere01g3595 | 1257 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 864 | 1093 | IPR029021 | - | |
| Dere01g3595 | 1257 | CDD | PTP_paladin | 14 | 311 | - | - | |
| Dere01g3595 | 1257 | PANTHER | TYROSINE SPECIFIC PROTEIN PHOSPHATASE AND DUAL SPECIFICITY PROTEIN PHOSPHATASE | 430 | 1175 | - | - | |
| Dere01g3595 | 1257 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 8 | 247 | IPR029021 | - | |
| Dere01g3595 | 1257 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 430 | 670 | IPR029021 | - | |
| Dere01g3595 | 1257 | CDD | PTP_paladin | 434 | 678 | - | - | |
| Dere01g3595 | 1257 | FunFam | Paladin isoform A | 444 | 676 | - | - | |
| Dere01g3595 | 1257 | FunFam | Paladin isoform B | 881 | 1118 | - | - | |
| Dere01g3595 | 1257 | Pfam | Inositol hexakisphosphate | 949 | 1104 | - | - | |
| Dere01g3595 | 1257 | Pfam | Inositol hexakisphosphate | 506 | 662 | - | - | |
| Dere01g3595 | 1257 | Pfam | Inositol hexakisphosphate | 88 | 242 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere01g3595 | Dere-ChrDere01 | 50283382 | 50293491 | Dispersed/Wgd |