Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3592 ATGGAGTGGAATAGATGTGTCAGAAACTTGGCATTTACGGCTTTAATGGTGGCCTTGATTGTTCCAAATGGGTACTGCGAGGGCGCTCGTGGTTACTACTCAAGCAGCGAATTCGTTCAACGAAATGAAACCCATTTCATAATGAGTGGGAAGCGACTGTACTTGAATGGCTTCAATGCCTACTGGTTAATGTACATGGCATCTGACCCATCCACAAGGTCCAAGGTTACCACCACTTTACAACAAGCTTCCCAGCTAGGTTTGAACGTTGCAAGAACTTGGGCTTTCAGCGATGGAGGTTACAGGTCTCTTCAGGTTTCTCCTGGTTCCTATGACGAGAATGTCTTCAGGGGATTGGATTTTGTGATATCAGAAGCTGGGAAATACGGGGTGCGACTCATACTAAGCTTGGCGAACAATTGGAACGATTTTGGTGGAAAAAAGCAGTATGTGCAGTGGGCAAGGGAACGTGGCCAAAGTGTGAGCAACGACGATGACTTTTTTACACACCCTGTTGTTAAGCAATATTATAAGAATCATATTAAGGCAGTGTTGACGAGAAAGAACACCATGACTGGGTTAGCATATAAAGATGATCCTACCGTTTTTGCTTGGGAACTAATGAATGAACCTCGTTCTCCACACGATTACTCTGGAAAAATCATTCAGGACTGGGTGAGCGAGATGGCTGCCTACATTAAATCCATTGATAGCAATCATATGCTAGAAATTGGGCTTGAAGGGTTTTATGGTGAAACAATGCCAGAGAAGAAGCAGTTCAATCCTGGATATCAAGTTGGAACTGACTTCATTTCAAATAATCGGGTTCCTCATATAGATTTTGCCACCATTCATTTGTACCCAGATCAATGGGTATCGGGTTCGGACGAAGCGGCCCAATCTGCTTTCGTCGACAAATGGGTCGAAGCCCATATCAAAGACTGTAATGAGATTCTAGGGAAGCCTATTGTAGTGAGTGAGTTTGGCAAGTCATCGAAGTCAAACGGATATAGTGTGGAGAAAAGAGACGAATACTATGAGAAGCTTTATAATGCCATATACAATAGTGCTAGAAGTGGAGGCTCGTGTGGAGGTGGCCTTTTCTGGCAGCTCATGGCACAAGGAATGGATAGCTTCCGTGACGGCTATGAAGTTATCTTTGAAGAGAGCCCTTCAACTATCAACGTCATCCGCCAACAATCTCATCGCATGTCTACTCAAATCATATAG 1230 0.4398 MEWNRCVRNLAFTALMVALIVPNGYCEGARGYYSSSEFVQRNETHFIMSGKRLYLNGFNAYWLMYMASDPSTRSKVTTTLQQASQLGLNVARTWAFSDGGYRSLQVSPGSYDENVFRGLDFVISEAGKYGVRLILSLANNWNDFGGKKQYVQWARERGQSVSNDDDFFTHPVVKQYYKNHIKAVLTRKNTMTGLAYKDDPTVFAWELMNEPRSPHDYSGKIIQDWVSEMAAYIKSIDSNHMLEIGLEGFYGETMPEKKQFNPGYQVGTDFISNNRVPHIDFATIHLYPDQWVSGSDEAAQSAFVDKWVEAHIKDCNEILGKPIVVSEFGKSSKSNGYSVEKRDEYYEKLYNAIYNSARSGGSCGGGLFWQLMAQGMDSFRDGYEVIFEESPSTINVIRQQSHRMSTQII 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3592 409 FunFam Mannan endo-1,4-beta-mannosidase 6 35 407 - -
Dere01g3592 409 PANTHER - 11 406 IPR045053 GO:0004553
Dere01g3592 409 Gene3D Glycosidases 34 408 - -
Dere01g3592 409 Pfam Cellulase (glycosyl hydrolase family 5) 53 351 IPR001547 GO:0004553|GO:0071704
Dere01g3592 409 SUPERFAMILY (Trans)glycosidases 38 397 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3592 Dere-ChrDere01 50269483 50271230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3592 16 405 Glycoside Hydrolase AT5G66460 55.897 3.30e-165 469