LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere01g3587	ATGGGTAACGGCACTTCTCGAGTTGTTGGCTGTTTAGTGCCATTTAACGGGAAAAGTGGAGTTGATTTGGAGTTTCTGGAGCCCTTAGACGAAGGACTAGGCCATTCTTTCTGTTATGTGAGGCCATCCATTTTTGAATCTCCTGCCATTACTCCATCAAACTCTGAGAGGTTTACTGTTGACTCCAGTACCCTTGATTCTGAAACTTTAAGTGGATCGTTTAGGCATGACAGTATAGAAGATTCCTCTGGCATACACAAACCAGGCAAGTGCTTCCCAGAAACCACATTCAAAACAATTTCAGGGGCTTCAGTCAGTGCCAATGTGTCAACCGCAAGGACTGGTAACCAGAGTGCATTATTTGCTAGTGACATCCAAGAGCCAGCTGCATCCTTTGAGGGAACCTCCTCATTTGCTGCAATCCCTTTGCAGCCTGTTCCCCGTGGTTCTGGACCTTTGAACGGTTTCATGTCAGGACCTCTTGAGAGAGGTTTTGCTTCAGGTCCACTGGATAGGGGTGGTGGTTTTATGTCTGGGCCAATAGAGAAGGGAGTCATGTCAGGTCCTCTTGATGCCACTGACAAGTCCAACTTTTCTGCACCGCTTGCACGAGGTCGTCGAAGGCCACGCCTCCAACAGCTCATGAGAAGTGTGAGTGGACCAATGAGAAACACTTTTTCTCGGACTTTCTCTAAGCATTCTGTGGGTGGCAGTTGGATGCAGCGGATGTTCTTTCGCCCAGTAACCCAATTGGCTTGGCATTCCAAAGATGCAAAGTTTCGACAAGAAGTCTCGAGAAACTGTATTGAAGTTGGACCATCTGAAGGGGAGTACAAACATAGACGCAATTTACAGTGGGCTCATGGCAAGGCTGGTGAAGATAGGGTTCATGTGGTACTTTCTGAAGAACAAGGATGGTTGTTTATTGGGATATATGATGGTTTTAGTGGACCAGATGCTCCTGATTTTTTGATGAGCCATCTTTATAGATTTGTAGACAAGGAACTGGAAGGGTTGCTTTGGGATTACGGAGATAATCCTGTAGATCTGCTTCAATCTGAAGTCCCAAAGACTGGAAATGCTGCCATTGCTCCAGAGTGCAGCAGGGAGGAACTGTCAAATAATCATACTGATTCAAATCAAGAAGCTTCTACTGGTCCGGCAATTGCCAAGGATCAATTGTGTTACACTGAGATAGTTGATGAAAATGTTACATTCAAGGTTAATGTTTTAGACCGATCCCCTAATGCTGGAAGTACCAGTAACTCAGGTACTGTTCCTGCTTCTGTTCCACTTAGACAGTTAAGTGGTCAAGGTAGAAAAAGTGTGAGGCTCTATGAGCTACTTCAGATGGAATCTTGGGATGAACAAGGTTCCGTGTCAATCTCAGGACAAGGTAAGGATTCTTCTGTTCTTATGGAACCGACACCAGCAGGGTGGATGAGATCTTGTTCACCCAATGCAAAAGAAGATAGTTCTAGACATCAGGATGAAACTCCCACTACATCAGGAGAAAATGGAGGGATTGGGTTTGAATCAATTAATCAAGATCCTGTAGCTGCTTTTTCTGTTTCAGGACAAAAGCAGAATACCAGAAAGTCATTCATTGGTACTAAAATTAGAAAAATGTACAGGAAGCAGAAGTCATTGCGTAAGAAACTTTTTCCTTGGAGTTATGATTGGCATAGGGAGGAAACTTGCATTGATGAGAAAATATTAGAAGTGTCCGGACCCATTCGAAAATGCAAATCTGGAGTAGTTGATCATGATGCAGTTTTAAGAGCAATGGCTCGAGCTCTTGACAGAACAGAAGAGGCATACATGGAAATGGTGGAGAGTAATCTGGAAAAAAATCCAGAACTTGCTTTAATGGGATCGTGTGTTTTAGTGATGCTGATGAAAGATCAAGATGTTTATGTCATGAACCTTGGAGATAGTCGTGTAATTTTGGCTCAAGAAAGACCAAATGATCGTCATCCGAACTCAAGTTTTGTTAAGGATGACGTGAGGCACAGAAATCGATCTAGAGAGTCATTAGTACGGATGGAGCTAGATAGAATCTCAGAGGAGTCCCCGATTCACAATCAAAACAGTCATGTTAACAAGATGAACAAAAATAGAGAGATATCCATTTGCAGATTAAAAATGAGAGCTCTTCAGCTTTCAACAGATCACAGCACAAGTATTGAAGAGGAAATTTTCAGAATTAGGGCAGAACACCCTGATGATAATCAAGCCATATTAAATGATAGAGTGAAAGGACAATTAAAAGTCACCAGAGCATTTGGTGCTGGATTCCTGAAGAGGGCATCTTTTAATGAAGTTCTATTGGAGATGTTTCAAGTTGATTATCTGGGCACTGCTCCTTACCTAAGTTGCATTCCTTCTGTTCTTCATCACCGACTTTCTTCAAGTGATCGGTTCTTGGTACTCTCCTCTGATGGGCTTTACCAATACTTCAGCAATGAAGAGGTAGTTGCCCATGTCACTTGGTTCATGGAAAATGTCCCTGAAGGTGATCCTGCACAATACCTGATTGCAGAGCTTCTCTTCCGTGCTGCTAAAAAGAATGGAATGGATTTTTATGAATTGCTTGACATTCCTCACGGAGATCGACGAAAATATCATGATGATGTTTCTGTTATGGTGGTTTCTCTGGAGGGAAGGATTTGGAGATCATCTGGATAA	2688	0.4282	MGNGTSRVVGCLVPFNGKSGVDLEFLEPLDEGLGHSFCYVRPSIFESPAITPSNSERFTVDSSTLDSETLSGSFRHDSIEDSSGIHKPGKCFPETTFKTISGASVSANVSTARTGNQSALFASDIQEPAASFEGTSSFAAIPLQPVPRGSGPLNGFMSGPLERGFASGPLDRGGGFMSGPIEKGVMSGPLDATDKSNFSAPLARGRRRPRLQQLMRSVSGPMRNTFSRTFSKHSVGGSWMQRMFFRPVTQLAWHSKDAKFRQEVSRNCIEVGPSEGEYKHRRNLQWAHGKAGEDRVHVVLSEEQGWLFIGIYDGFSGPDAPDFLMSHLYRFVDKELEGLLWDYGDNPVDLLQSEVPKTGNAAIAPECSREELSNNHTDSNQEASTGPAIAKDQLCYTEIVDENVTFKVNVLDRSPNAGSTSNSGTVPASVPLRQLSGQGRKSVRLYELLQMESWDEQGSVSISGQGKDSSVLMEPTPAGWMRSCSPNAKEDSSRHQDETPTTSGENGGIGFESINQDPVAAFSVSGQKQNTRKSFIGTKIRKMYRKQKSLRKKLFPWSYDWHREETCIDEKILEVSGPIRKCKSGVVDHDAVLRAMARALDRTEEAYMEMVESNLEKNPELALMGSCVLVMLMKDQDVYVMNLGDSRVILAQERPNDRHPNSSFVKDDVRHRNRSRESLVRMELDRISEESPIHNQNSHVNKMNKNREISICRLKMRALQLSTDHSTSIEEEIFRIRAEHPDDNQAILNDRVKGQLKVTRAFGAGFLKRASFNEVLLEMFQVDYLGTAPYLSCIPSVLHHRLSSSDRFLVLSSDGLYQYFSNEEVVAHVTWFMENVPEGDPAQYLIAELLFRAAKKNGMDFYELLDIPHGDRRKYHDDVSVMVVSLEGRIWRSSG	895

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere01g3587	895	ProSiteProfiles	PPM-type phosphatase domain profile.	277	886	IPR001932	-
	Dere01g3587	895	PANTHER	PROTEIN PHOSPHATASE 2C	280	885	IPR015655	GO:0004722\|GO:0006470
	Dere01g3587	895	MobiDBLite	consensus disorder prediction	67	86	-	-
	Dere01g3587	895	Gene3D	-	528	892	IPR036457	-
	Dere01g3587	895	SMART	PP2C_4	277	884	IPR001932	-
	Dere01g3587	895	MobiDBLite	consensus disorder prediction	366	386	-	-
	Dere01g3587	895	Gene3D	-	255	420	IPR036457	-
	Dere01g3587	895	SUPERFAMILY	PP2C-like	290	887	IPR036457	-
	Dere01g3587	895	MobiDBLite	consensus disorder prediction	457	512	-	-
	Dere01g3587	895	Pfam	Protein phosphatase 2C	711	857	IPR001932	-
	Dere01g3587	895	MobiDBLite	consensus disorder prediction	414	433	-	-
	Dere01g3587	895	CDD	PP2Cc	588	886	IPR001932	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere01g3587	Dere-ChrDere01	50218909	50224123	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere01g3587	1	895	PP2C-type Phosphatase Gene Family	AT2G46920	64.823	0.0	1135