LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere01g3581	ATGGGGAGGCACTCTTGCTGCTACAAGCAGAAGCTTCGCAAGGGTCTCTGGTCCCCTGAAGAGGATGAGAAACTCTTGAGGCATATTACTAAGTATGGCCATGGCTGTTGGAGCTCTGTTCCGAAGCAAGCAGGCTTGCAGAGATGTGGAAAGAGCTGTAGGCTCAGGTGGATCAACTACTTAAGGCCTGATTTAAAGAGAGGCACATTCTCGCAGGAAGAAGAAAACCTCATCATTGAGCTTCATGCAGTTTTAGGGAATAGATGGTCTCAAATTGCAGCACAGTTGCCGGGGAGGACGGACAATGAAATAAAGAATCTGTGGAATTCATGCCTGAAGAAGAAGCTAAGGCAAAGAGGGATAGACCCTGTGACCCATAAACCACTGTCTGAAGTTGAAAACGGAGATCAGGACAAAGATGGTGGAGAGAAAGTGAGAGCTGTTAATTCCAATGAAATGAACCTCCTGAAATCAGAAAGCTCCAAGTCCGATGGAGCTTCCTACGAGCACAAACCATGTTCAAGTATTGCCGCTAAACCCTATGCACCCGACATGGAAGGTTCTTCTTCCACTTCCAAGATTAGCACCAGAAGCAACACTAATTTCGCCGCTGATTCTTCAAGCAAAGACTTGTTCCTGGACAGGTTCATGACCACCCACCAGGAAAGCTACACTTCTTCAGATATGATGGCGAATTTCCCCCTCCAAATGGCTTATAACAATTCATCCACTGACTCTTCTCGTTGGTTCGCCCAAATTGGAGGAAGACCATTTGATATCAACTCGGAATTCACCTCCAATGCCATGTCCACTGTCTTTCCACTTTCAACCACCTCATTTCTCCCTACTTCTATTTGCTACAAACCTTCTCTCTCGGTTCCCTCTGATGATATTTGTACGGCTTCTTTTTCCATGAATGGATCTCAGTACTGGGAAGCCAGTGCTTCCAACCATAGCAATAGCAGCATTAGAAACAGCCCTTCAAACTTGCAGAACAGTATTCTCTCTTGGGGATTGACGGATTGTGGTGCTGCTGCTAAAGGGCCTCCTCAAATGCATATGACGGAGAGTCAGACAGAAGAAGCAAAGTGGGCTGAGTACCTTCATAATAACCCAATCTTAATGCTAGCTGCTGTACAGAATCAAGCTCCAGAATCCTTATGCAACGAGATAAAGCCAGCCTCACATTTGGTACCTGATACTTACGGAGCTATTTTGCCTCATCACAAGCAGCAAGACCAATCTTCACAAACTTCCACTATATTTTCCAAGGACGTCCAGAAGCTCACTGCAGCTTTTGGACATATATAG	1311	0.4561	MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQEEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPVTHKPLSEVENGDQDKDGGEKVRAVNSNEMNLLKSESSKSDGASYEHKPCSSIAAKPYAPDMEGSSSTSKISTRSNTNFAADSSSKDLFLDRFMTTHQESYTSSDMMANFPLQMAYNNSSTDSSRWFAQIGGRPFDINSEFTSNAMSTVFPLSTTSFLPTSICYKPSLSVPSDDICTASFSMNGSQYWEASASNHSNSSIRNSPSNLQNSILSWGLTDCGAAAKGPPQMHMTESQTEEAKWAEYLHNNPILMLAAVQNQAPESLCNEIKPASHLVPDTYGAILPHHKQQDQSSQTSTIFSKDVQKLTAAFGHI	436

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere01g3581	436	Gene3D	-	69	140	-	-
	Dere01g3581	436	PANTHER	MYB DOMAIN PROTEIN 55	1	351	-	-
	Dere01g3581	436	ProSiteProfiles	Myb-like domain profile.	9	61	IPR001005	-
	Dere01g3581	436	MobiDBLite	consensus disorder prediction	185	203	-	-
	Dere01g3581	436	Pfam	Myb-like DNA-binding domain	14	61	IPR001005	-
	Dere01g3581	436	Pfam	Myb-like DNA-binding domain	67	111	IPR001005	-
	Dere01g3581	436	Gene3D	-	11	67	-	-
	Dere01g3581	436	SMART	sant	13	63	IPR001005	-
	Dere01g3581	436	SMART	sant	66	114	IPR001005	-
	Dere01g3581	436	MobiDBLite	consensus disorder prediction	122	203	-	-
	Dere01g3581	436	FunFam	Myb transcription factor	11	67	-	-
	Dere01g3581	436	CDD	SANT	17	61	IPR001005	-
	Dere01g3581	436	MobiDBLite	consensus disorder prediction	122	146	-	-
	Dere01g3581	436	FunFam	MYB transcription factor	68	140	-	-
	Dere01g3581	436	CDD	SANT	69	109	IPR001005	-
	Dere01g3581	436	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	9	61	IPR017930	-
	Dere01g3581	436	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	62	116	IPR017930	-
	Dere01g3581	436	SUPERFAMILY	Homeodomain-like	12	108	IPR009057	-
	Dere01g3581	436	ProSiteProfiles	Myb-like domain profile.	62	112	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere01g3581	Dere-ChrDere01	50168135	50169610	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere01g3581	1	435	MYB Transcription Factor Family	AT1G09540	42.664	6.72e-96	291

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Dere01g3581		Myb_DNA-binding	2.1e-14	CL0123