Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3573 ATGGGAAAAGCCTCTAGCTCTTCCTCTTCATCCATCAGCAGTAGCAACCACCCACTTATCTCAACTGCATCATCTCTCACCCACCTCAACAACACCGACCTTCCTACAGATCTGAGGCTTGGTTTAAGCATTTCAGCAACTCAACATGTTGGCTCTTCCATTTCAAGGGGGCAACAATCGGATTGGACGCCAATCCAGCGCGCTCAAGCTGCAGAAGTAAACGATTATGGCGATCATAGCAGCTTATTTGTAAAGGTGTACATGGAGGGCATTCCAATAGGCAGAAAACTCAATCTGGTAGCGCATGATGGCTACCATGAGTTAGTGAAGACTCTTGAACACATGTTTGATACTACCATTCTCTGGGGGACTGGAATGGATGGGGTGCAACCAGAGAGGTGCCATGTGCTGACATACGAAGACGAAGAAGGTGACTTGGTCATGGTTGGGGATGTTCCCTGGGAGATGTTCCTATCGACTGTGAAGAGATTGAAGATAACGAGGGTAGACGCATTCGGGTGTTAA 525 0.4781 MGKASSSSSSSISSSNHPLISTASSLTHLNNTDLPTDLRLGLSISATQHVGSSISRGQQSDWTPIQRAQAAEVNDYGDHSSLFVKVYMEGIPIGRKLNLVAHDGYHELVKTLEHMFDTTILWGTGMDGVQPERCHVLTYEDEEGDLVMVGDVPWEMFLSTVKRLKITRVDAFGC 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3573 174 SUPERFAMILY CAD & PB1 domains 77 166 - -
Dere01g3573 174 ProSiteProfiles PB1 domain profile. 81 171 IPR000270 GO:0005515
Dere01g3573 174 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 35 169 IPR003311 GO:0005634|GO:0006355
Dere01g3573 174 Gene3D - 76 173 - -
Dere01g3573 174 Pfam AUX/IAA family 69 168 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3573 Dere-ChrDere01 50074801 50075606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3573 85 166 B3 DNA Binding Superfamily AT4G23980 40.244 6.58e-13 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Dere01g3573 AUX_IAA 1.1e-29 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3573 01 50074801 50075606 Dere02g0412 02 4131197 4132043 CCT