Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3572 ATGACGTCACCATTAAGCCAGGTCAAACCAGTTGACGGCACGGCTCTAATGACGGTGGTTATAGTCAGTGGGGCCTATGTGATTGGAAAACCTAATCCACTTGACTTTGAAGCCAACGACGACGTCATTGGGATCATCCGTCCACGTCAACCTTGCCTCCGTCCAACTCTAAACCAATTGGGCATCGCAGATTCAAAGGCGGAAACATATTTACTGCTTTCTCTTAATTTGGATTTTGAATGGAAGATAAATGATGATATAATCAAGGGCGTCGACTTTAGACTCAGGGTTTGCAGAGGACCAAGTAAATGGGTGAACCCCACTATGAATCAACTAAAGAATATGAAAAAGGAAGCGACCTCTCATATGTGCCCCAACCCCAGCGAGAAAGAGAAAGCTCAGAAGCTAGTGCCTATTTTCAACCATCTAGCAAGACTTTTAATAATGCTTCCTAAATGGAAAGACTCCGTTCCCCTTTTGAATACAACTTCGTTTCTTCTAGCAAGGGAGTTGAAAGTTAGTGTAGGATGGAAAGGATTTACAGGAAAGGGCTCCTTGGCAGGGCCAGGGGTCACAATAACAGGAAGCCTTTTAATACCTGCAATTCAAAAAGGCTCATTATGGTATAGTTTAGCGTTGGGTGTGTCTATAAAAGCCCTTCTTGCTCGTTCTCGTTCCAACACAAAGACAATTGTTAACGTTTTCACCATTATTAACCAAATGGCATCCTCGTTCTCCTCTGCTTCTTTTCGCTTCTTAATCTCTAGCTTCTTACTCTGTTCTACCTATTTTGCATCCTTAGGAGCTGAGGCTCGTTTCCCACCCATCATACCCGTTTCATCTCTCATAAACAAAAAGCTTTTTGATACCATATTCCTACACAAAGATGACACTGCATGCCCTGCCAAAGGCTTCTACACCTACGAGTCTTTCATTCATGCAACGCGATGCTTCCCTGGATTTGGTACTACGGGAAGTTTATCCACACGAAAGCGTGAGATTGCTGCATTTCTTGCTCAAATCTCCCATGAGACCACAGGTGGATGGCCTACTGCACCTGACGGTCCCTATGCTTGGGGCTTGTGCTACAAGGAAGAAATTAGTCCTCGGAGTAACTACTGCGACCCCACTAACACACAATGGCCCTGTTACCCTGGCAAACGTTACTATGGCAGAGGACCCATTCAACTTTCTTGGAACTATAACTATGGGCCAGCTGGGAAGGCTTTGGGATTTGATGGGTTGAAGAACCCTGAAATTGTAGCAAACAATTCTGTGATCGCATTTAAGACGGCTCTGTGGTTTTGGATGACTGAACGAATGCCGATGCCTTCTTGCCACAATGTGATGGTCGGGAAATATATGCCAACACAAGCTGACATAGCAGCTAATCGAACGGCTGGCTATGGGTTGGTGACTAACATAATCAACGGTGGATTGGAGTGTGGACTTCCTAATGATGCAAGAGTGAATGATCGAATTGGGTTCTTCCAAAGATATGCCAAATTGTTTAACGTAGATACAGGACCTAACTTGGATTGCGCGTACCAGAAATCCTTCTGA 1563 0.4459 MTSPLSQVKPVDGTALMTVVIVSGAYVIGKPNPLDFEANDDVIGIIRPRQPCLRPTLNQLGIADSKAETYLLLSLNLDFEWKINDDIIKGVDFRLRVCRGPSKWVNPTMNQLKNMKKEATSHMCPNPSEKEKAQKLVPIFNHLARLLIMLPKWKDSVPLLNTTSFLLARELKVSVGWKGFTGKGSLAGPGVTITGSLLIPAIQKGSLWYSLALGVSIKALLARSRSNTKTIVNVFTIINQMASSFSSASFRFLISSFLLCSTYFASLGAEARFPPIIPVSSLINKKLFDTIFLHKDDTACPAKGFYTYESFIHATRCFPGFGTTGSLSTRKREIAAFLAQISHETTGGWPTAPDGPYAWGLCYKEEISPRSNYCDPTNTQWPCYPGKRYYGRGPIQLSWNYNYGPAGKALGFDGLKNPEIVANNSVIAFKTALWFWMTERMPMPSCHNVMVGKYMPTQADIAANRTAGYGLVTNIINGGLECGLPNDARVNDRIGFFQRYAKLFNVDTGPNLDCAYQKSF 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3572 520 CDD chitinase_GH19 283 514 - -
Dere01g3572 520 SUPERFAMILY Lysozyme-like 279 520 IPR023346 -
Dere01g3572 520 ProSitePatterns Chitinases family 19 signature 2. 427 437 IPR000726 GO:0004568|GO:0006032|GO:0016998
Dere01g3572 520 PANTHER CHITINASE-RELATED 278 518 - -
Dere01g3572 520 ProSitePatterns Chitinases family 19 signature 1. 300 322 IPR000726 GO:0004568|GO:0006032|GO:0016998
Dere01g3572 520 FunFam Endochitinase (Chitinase) 365 423 - -
Dere01g3572 520 Gene3D - 286 520 - -
Dere01g3572 520 Gene3D Endochitinase, domain 2 365 423 - -
Dere01g3572 520 Pfam Chitinase class I 282 514 IPR000726 GO:0004568|GO:0006032|GO:0016998
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3572 Dere-ChrDere01 50063194 50073430 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3572 240 520 Glycoside Hydrolase AT4G01700 66.904 8.83e-142 408