Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere01g3565 | ATGGTTGCCAGTCCAACTGAAGTAAATCACATTCTGACTCCGCAGCGTTTTGCCCTAAGTGGAAAAGTCATAAGCGCCGAATTTCGGAAGCGAATCACAGACACCACAATTGCCGTCGCATACGCTCGTTTCCTTGATCGCCATCTGCCTGCCTTCCGGCATATTTGTAACGGGTGGAGATTCAGGATGGCCGGGGCTGAGGCTAACAAGTCCACTGCAAAACAATCTGGTGGCGAGAAGAAGAAGGAGGTGAAGAAAGAGACAGGTTTAGGGCTTACAAATAAGAAGTCAGAGAACTTTGGGGAATGGTACGCTGAGGTGGTTGTCAATTCGGAAATGATTGACTACTATGATATTTCTGGATGCTATATTCTTAGGCCGTGGGCAATGACAATCTGGGAGATTATGCAAGCCTTCTTTGATGCAGAGATAAAGAAAATGAAAGTCAGGAGCTGCTACTTCCCTTTGTTTGTGTCTGCTGGCGCTTTGCAAAAGGAGAAGGATCATGTTGAGGGCTTTGCACCAGAGGTTGCTTGGGTGACAAAGTCTGGGGAAACTGATTTAGAAGTTCCTATTGCTATTCGCCCCACTAGTGAAACTGTCATGTATCCCTACTACTCTAAGTGGATAAGGGGTCATCGTGATTTGCCTTTGAAACTCAATCAGTGGTGCAATGTTGTTAGATGGGAGTTCAGTAATCCCACACCATTTATCAGGAGTCGTGAGTTTCTTTGGCAGGAAGGGCATTCTGCTTTTGCGACAAAGGAGGAGGCACATGCAGAGGTCCTTGCTATAGTAGAATTGTATAGGCGTGTATTCGAAGAATATTTGGCAGTGCCTGTCATAAAGGGGCAGAAAAGTGAGCTGGAGAAGTTTGCTGGTGGACTTTACACCTTCAGTGTAGAGGCATTTATTCCAAACACTGGTCGTGGTATACAAGGTGCAACTTCTCATTGTCTTGGCCAGAAATTTGCTAAAATGTTTGAGATAAATTTTGAAAATGAGAAAGGAGAGAAGGCAATGGTCTGGCAGAACTCATGGGGCTATAGTACTCGAACTATTGGGGTGATGGTGATGATTCATGGGGATGACAGAGGGCTTGTGCTGCCACCTAAAGTTGCATCAGTTCAAGTCATTGTGATTCCGGTGCCTTATAAAGATGCTGATACTCAAGGTATTTATAATGCCTGTTCTGCCACTGTGGATGCTTTGTGTGAAGCAGGTATTCGTGCTGAGTCAGACTTTAGAGATAACTATTCTCCTGGTTGGAAGTATTCACACTGGGAAATGAAAGGTGTTCCTCTAAGGATTGAAATTGGACCAAAAGATTTGGCAAATAAGCAGGTGCGGGCAGTTCGACGTGATAATGCAGCCAAAATAGACATACCTAATGATGATTTGGTTGAGCAAGTCAAAGACTTGCTGCATAATATTCAACAAAACCTGTTTGATGAAGCAAAACAGAAACGTGATGCTTGCATTCAGGTTGTACATACTTGGGATGAATTCATGGAAGCATTGAACCAAAGAAAAATGATTTTAGCTCCTTGGTGTGATGAGGAGTCCGTGGAAGTAGATGTGAAAGCAAGGACAAGGGGTGAGATGGGAGCAGCTAAGTCCCTTTGTAGTCCTGTCAATCAGCCAGAACTCCCTGAAGGTACTAAATGCTTTGCATCTGGAAAGCCTGCTAAGAAGTGGACGTACTGGGGCAGAAGTTACTAG | 1722 | 0.4448 | MVASPTEVNHILTPQRFALSGKVISAEFRKRITDTTIAVAYARFLDRHLPAFRHICNGWRFRMAGAEANKSTAKQSGGEKKKEVKKETGLGLTNKKSENFGEWYAEVVVNSEMIDYYDISGCYILRPWAMTIWEIMQAFFDAEIKKMKVRSCYFPLFVSAGALQKEKDHVEGFAPEVAWVTKSGETDLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHSAFATKEEAHAEVLAIVELYRRVFEEYLAVPVIKGQKSELEKFAGGLYTFSVEAFIPNTGRGIQGATSHCLGQKFAKMFEINFENEKGEKAMVWQNSWGYSTRTIGVMVMIHGDDRGLVLPPKVASVQVIVIPVPYKDADTQGIYNACSATVDALCEAGIRAESDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANKQVRAVRRDNAAKIDIPNDDLVEQVKDLLHNIQQNLFDEAKQKRDACIQVVHTWDEFMEALNQRKMILAPWCDEESVEVDVKARTRGEMGAAKSLCSPVNQPELPEGTKCFASGKPAKKWTYWGRSY | 573 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere01g3565 | 573 | SUPERFAMILY | Class II aaRS and biotin synthetases | 98 | 364 | IPR045864 | - | |
| Dere01g3565 | 573 | SUPERFAMILY | C-terminal domain of ProRS | 495 | 573 | IPR017449 | GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Dere01g3565 | 573 | ProSiteProfiles | Aminoacyl-transfer RNA synthetases class-II family profile. | 155 | 370 | IPR006195 | - | |
| Dere01g3565 | 573 | PANTHER | PROLYL-TRNA SYNTHETASE | 65 | 573 | IPR004499 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Dere01g3565 | 573 | Gene3D | Bira Bifunctional Protein; Domain 2 | 93 | 370 | IPR045864 | - | |
| Dere01g3565 | 573 | CDD | ProRS_core_arch_euk | 99 | 360 | IPR033721 | - | |
| Dere01g3565 | 573 | FunFam | bifunctional glutamate/proline--tRNA ligase | 371 | 491 | - | - | |
| Dere01g3565 | 573 | SUPERFAMILY | Class II aaRS ABD-related | 366 | 491 | - | - | |
| Dere01g3565 | 573 | NCBIfam | proline--tRNA ligase | 94 | 573 | IPR004499 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Dere01g3565 | 573 | Pfam | Anticodon binding domain | 377 | 473 | IPR004154 | - | |
| Dere01g3565 | 573 | Pfam | tRNA synthetase class II core domain (G, H, P, S and T) | 192 | 358 | IPR002314 | GO:0000166|GO:0004812|GO:0005524|GO:0006418 | |
| Dere01g3565 | 573 | Gene3D | - | 494 | 573 | IPR017449 | GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Dere01g3565 | 573 | PRINTS | Prolyl-tRNA synthetase signature | 192 | 203 | IPR002316 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Dere01g3565 | 573 | PRINTS | Prolyl-tRNA synthetase signature | 222 | 230 | IPR002316 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Dere01g3565 | 573 | PRINTS | Prolyl-tRNA synthetase signature | 232 | 243 | IPR002316 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Dere01g3565 | 573 | PRINTS | Prolyl-tRNA synthetase signature | 151 | 169 | IPR002316 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Dere01g3565 | 573 | SMART | ProRS_C_1_2 | 500 | 573 | IPR016061 | GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Dere01g3565 | 573 | FunFam | Proline--tRNA ligase, cytoplasmic | 494 | 573 | - | - | |
| Dere01g3565 | 573 | CDD | ProRS_anticodon_zinc | 366 | 573 | - | - | |
| Dere01g3565 | 573 | FunFam | Bifunctional glutamate/proline--tRNA ligase | 92 | 370 | - | - | |
| Dere01g3565 | 573 | Gene3D | - | 371 | 491 | IPR036621 | - | |
| Dere01g3565 | 573 | Hamap | Proline--tRNA ligase [proS]. | 93 | 573 | IPR004499 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Dere01g3565 | 573 | Pfam | Prolyl-tRNA synthetase, C-terminal | 500 | 573 | IPR016061 | GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere01g3565 | Dere-ChrDere01 | 49994600 | 50008621 | Dispersed |