Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere01g3562 | ATGGCTAACCCAACACAACCAGATGTTGGGTCTTCCTTCACTATCTCCCCTTCTAACCCAGGCATACAGAATCCTTACCCTGAGAAAAGTGCAATTATCCCTCCCCCTTCAAGTTTTGCTACAGCGCCTAGATTTCCTCCACCAAAATTACAAGATCAAGCTTCTTCACCTTCCATCAGAACCCCGACCGTTTTATCACCAGCTAATGGTGTTAAAACTGGCAGTCCTGTTCCTCATTTGAGCACCCCCCCTGGGCCTCCTGTTTTTACTTCACCTGTCCGTCCAGCGGCTGTTCCTTTTCGCACATCACCTGCATCACCTCAGCCAGTTGCTTTATCTTCAGGTTCATCTTTACCAACATCATCACCACCACAATTTTCAAACGGGTCTTTTGAGTTGCAGCACCAAGTTTCTGACGTTACAGAAGATCAAGTTTATGTTGGGGAATCTTCATTTGTTCTTTTCTCAGCTCATAAGGTATTGAAGCAGAAGAAACAAGCAAACGTGCCCAGCTTGGGTTTTGGGGCATTGGTCTCTCCTGGAAAGGAGGTCTCAGCAGGCCCTCAAGTAATACAGCGTGATCCCCATCGTTGCCAAAGCTGTGGAGCTTATGCAAACATCTATTGCAACATATTGCTTGGATCAGGCCAGTGGCAGTGTGTAATATGTCGGAAACTGAATGGAAGTGATGGTGAGTACATGGCTCCCAGCAAGGAAGACCTTCGCAGATTTCCAGAACTATCATCACCTGTGGTTGATTATATTCAAACTGGGAACAAGAGACCTGGTTTTGTTCCAGTTTCAGATTCTAGAATGTCTGCACCAATTGTTCTTGTGATAGATGAATGCTTAGATGAACCTCACCTACACCATCTACAGAGCTCATTGCATGCTTTTGTTGATTCGCTTTCCCCAACAACAAGGATTGGCATTGTACTGTATGGCCGTACTGTATCAGTTTATGACTTTTCAGAGGAGTCAGTTGCATCTGCTGATGTGCTTCCTGGGGACAAATCACCAACTCAAGAATCTTTGAAAGCATTAATTTATGGTACTGGTATCTACTTGTCCCCAATGCATGCATCACTTCCTGTAGCGCATGCCATATTCTCATCACTGAGACCATACAAGTTGAACATGCCTGAAGCTTCTAGAGATCGGTGCCTAGGTACTGCTGTTGAGGTTGCTCTTGCTATAATTCAGGGACCTTCTGCAGAACTGTCCCGAGGGGTGGTCAAAAGGTCAGGGGGCAATAGCAGAATTATTGTCTGTGCTGGCGGGCCCAGTACTTACGGCCCTGGATCTGTTCCCCCTTCATTTAGTCACCCTAATTATCCTCATATGGAAAGGACAGCATTGAAATGGATGGAAAATTTAGGACGTGAGGCTCATCGTCACAATACTGTGGTTGACATTTTATGTGCTGGAACATGCCCCGTCAGAGTTCCTATTTTGCAGCCTCTTGCAAAAGCATCAGGCGGTGTTTTAGTTCTCCATGATGATTTTGGGGAAGCTTTTGGTGTTAATTTGCAAAGGGCATCTGCCAGAGCAGCAGGTTCTCATGGTTTGTTGGAATTACGCACATCGGATGATATTCTCATTACACAAGTTGTAGGTCCTGGTGAAGAGGCACATGTGGACACTCACGAATCTTTTAAAAATGACACTGCTCTTTATATTCAAATGTTGAGTGTTGAAGAAACTCAGAGCTTCTCTCTTTCCATGGAAACTAAAGGAGATATTAAAAGTGATAGTGTGTTTTTCCAGTTTGCAATTCAGTATTCAAATGTGTATCAAGCTGATGTATCAAGGGTGATTACTGTTAGACTGCCAACTGTAGATAGTATTTCAGGATATCTTGATAGTGTTCAAGATGAAGTGGCAGCTGTCCTCATTGCAAAGCGGACTCTGTTACGAGCCAAAAACTATTCTGACGCAATTGACATGCGAGCCACAGTGGATGAAAGAATCAATGATATTGCTCTGAAATTTGGCTCCCAATTACCCAAGTCAAAACTTTATCGATTCCCAAAGGAGTTGTCTCTCTTACCTGAGCTCCTTTTCCATCTCAAAAGAGGGCCACTGTTGGGAAGCATTATTGGTCATGAAGATGAGAGGTCTGTGCTGCGGAACCTGTTTCTAAATGCATCATTTGATCTATCACTCCGAATGGTTGCTCCTCGTTGTTTAATGCACAGGGAGGGGGGAACTTTTGAGGAACTACCTGCTTACGATCTTGCTATGCAGTCTGATGCTGCTGTTGTTCTTGACCATGGCACTGATGTCTTCATTTGGTTGGGTGCCGAACTTGCTGCTGATGAAGGAAGAAGTGCTGCTGCTTTAGCTGCTTGCCGAACTTTGGCTGAGGAGCTTACCGAATTGCGTTTTCCAGCTCCTCGTATCCTTGCATTTAAGGAGGGTAGCTCACAGGCCCGATATTTTGTTTCTCGTCTCATACCAGCGCACAAGGATCCTCCTTATGAGCAGGAAGCAAGATTCCCCCAACTTAGGTCATTGACACCGGAGCAGCGGACAAAGCTAAAAAGCAGTTTTATTCACTTTGATGATCCTAGTTTCTGCGAGTGGATGAAAAGTTTGAAAGTGGTACCTCCAGAACTTAGCTGA | 2625 | 0.448 | MANPTQPDVGSSFTISPSNPGIQNPYPEKSAIIPPPSSFATAPRFPPPKLQDQASSPSIRTPTVLSPANGVKTGSPVPHLSTPPGPPVFTSPVRPAAVPFRTSPASPQPVALSSGSSLPTSSPPQFSNGSFELQHQVSDVTEDQVYVGESSFVLFSAHKVLKQKKQANVPSLGFGALVSPGKEVSAGPQVIQRDPHRCQSCGAYANIYCNILLGSGQWQCVICRKLNGSDGEYMAPSKEDLRRFPELSSPVVDYIQTGNKRPGFVPVSDSRMSAPIVLVIDECLDEPHLHHLQSSLHAFVDSLSPTTRIGIVLYGRTVSVYDFSEESVASADVLPGDKSPTQESLKALIYGTGIYLSPMHASLPVAHAIFSSLRPYKLNMPEASRDRCLGTAVEVALAIIQGPSAELSRGVVKRSGGNSRIIVCAGGPSTYGPGSVPPSFSHPNYPHMERTALKWMENLGREAHRHNTVVDILCAGTCPVRVPILQPLAKASGGVLVLHDDFGEAFGVNLQRASARAAGSHGLLELRTSDDILITQVVGPGEEAHVDTHESFKNDTALYIQMLSVEETQSFSLSMETKGDIKSDSVFFQFAIQYSNVYQADVSRVITVRLPTVDSISGYLDSVQDEVAAVLIAKRTLLRAKNYSDAIDMRATVDERINDIALKFGSQLPKSKLYRFPKELSLLPELLFHLKRGPLLGSIIGHEDERSVLRNLFLNASFDLSLRMVAPRCLMHREGGTFEELPAYDLAMQSDAAVVLDHGTDVFIWLGAELAADEGRSAAALAACRTLAEELTELRFPAPRILAFKEGSSQARYFVSRLIPAHKDPPYEQEARFPQLRSLTPEQRTKLKSSFIHFDDPSFCEWMKSLKVVPPELS | 874 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere01g3562 | 874 | PANTHER | PROTEIN TRANSPORT PROTEIN SEC23 | 158 | 870 | IPR037364 | - | |
| Dere01g3562 | 874 | SUPERFAMILY | Helical domain of Sec23/24 | 625 | 725 | IPR036175 | GO:0006886|GO:0006888|GO:0030127 | |
| Dere01g3562 | 874 | SUPERFAMILY | Zn-finger domain of Sec23/24 | 186 | 259 | IPR036174 | GO:0006886|GO:0006888|GO:0008270|GO:0030127 | |
| Dere01g3562 | 874 | CDD | gelsolin_like | 727 | 818 | - | - | |
| Dere01g3562 | 874 | SUPERFAMILY | C-terminal, gelsolin-like domain of Sec23/24 | 727 | 867 | IPR036180 | - | |
| Dere01g3562 | 874 | Gene3D | - | 185 | 248 | - | - | |
| Dere01g3562 | 874 | CDD | trunk_domain | 269 | 512 | - | - | |
| Dere01g3562 | 874 | Pfam | Sec23/Sec24 zinc finger | 195 | 233 | IPR006895 | GO:0006886|GO:0006888|GO:0008270|GO:0030127 | |
| Dere01g3562 | 874 | Pfam | Sec23/Sec24 beta-sandwich domain | 521 | 612 | IPR012990 | - | |
| Dere01g3562 | 874 | MobiDBLite | consensus disorder prediction | 51 | 70 | - | - | |
| Dere01g3562 | 874 | FunFam | Protein transport protein SEC23 | 186 | 248 | - | - | |
| Dere01g3562 | 874 | SUPERFAMILY | beta-sandwich domain of Sec23/24 | 22 | 623 | - | - | |
| Dere01g3562 | 874 | FunFam | Protein transport protein SEC23 | 275 | 520 | - | - | |
| Dere01g3562 | 874 | Pfam | Sec23/Sec24 helical domain | 626 | 722 | IPR006900 | GO:0006886|GO:0006888|GO:0030127 | |
| Dere01g3562 | 874 | Gene3D | Severin | 741 | 836 | IPR029006 | - | |
| Dere01g3562 | 874 | Gene3D | von Willebrand factor, type A domain | 275 | 520 | IPR036465 | - | |
| Dere01g3562 | 874 | MobiDBLite | consensus disorder prediction | 106 | 130 | - | - | |
| Dere01g3562 | 874 | MobiDBLite | consensus disorder prediction | 1 | 130 | - | - | |
| Dere01g3562 | 874 | FunFam | Protein transport protein SEC23 | 741 | 838 | - | - | |
| Dere01g3562 | 874 | Gene3D | Sec23/Sec24 helical domain | 614 | 733 | - | - | |
| Dere01g3562 | 874 | MobiDBLite | consensus disorder prediction | 79 | 93 | - | - | |
| Dere01g3562 | 874 | SUPERFAMILY | vWA-like | 276 | 508 | IPR036465 | - | |
| Dere01g3562 | 874 | Pfam | Sec23/Sec24 trunk domain | 277 | 503 | IPR006896 | GO:0006886|GO:0006888|GO:0030127 | |
| Dere01g3562 | 874 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
| Dere01g3562 | 874 | FunFam | Protein transport protein SEC23 | 613 | 733 | - | - |