Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3560 ATGGGGACGGAGAATGACCAGAATGAGGCAAGCACGTCAAAGAATGAAGCAGGAACAAGCACAAACGGAGAAAACGGTGAACAGAGGAAGCAAACAGCCGAGACCGAGACAGTTCCGCTTCACAAGTTGTTCTCATTCGCCGACTCTACTGATATATTGTTGATGGTCCTTGGCACCATTGGGGCCATTGGAAATGGTATGGGTTTGCCTCTCATGACGTTGCTGTTTGGCGAGATGATTAACTCCTTCGGAAGTAACCAGTATAGCGCCGACGTGGTTGATCAAATTTCCAAGGTGTCTCTGAAGTTTGTGTACTTGGCGGTTGGATCTGGGGTGGCAGCTTTCCTCCAGGTGGCTTGCTGGATGGTCACAGGGGAGAGACAGGCGGCGAGAATAAGGGGTTTGTATTTGAAAACAATACTAAGACAAGATGTGGCTTTCTTTGATAAGGAAACAAACACCGGAGAGGTGGTAGGGAGAATGTCAGGTGACACCGTTCTTATACAAGACGCCATGGGTGAGAAGGTTGGGAAATTTCTGCAGCTAATATCAACATTCATCGGCGGGTTTGTAATATCATTTGTCAAAGGGTGGCTTCTTAGCCTTGTCATGTTATCCACTATTCCACTTCTTGTGGTGTCTGGCGCGGCTATTGCCGTTATTATAGGCAAGATGGCATCCCAAGGCCAAACCGCTTACGGAAAAGCTGCAAATGTAGTTGAACAGACAATTGGCGCAATTAGAACTGTTGCAACCTTCACTGGGGAAAAGCAAGCAATATCTAGTTATAGCAGATTTCTCGTAGATGCATACAAAGCAGGAGTTCGTGAAGGTTTCGTAGCTGGAATGGGTCTTGGCACTGTTATGTTTGTTATTTTCTGTGGCTATGCTTTGGCTATATGGTATGGTGCAAAGTTGATTATGGATAATAAAGGATATAACGGCGGTACAGTGATTAACGTGATCTTTGCCATCCTCACTGCTTCCATGTCTCTTGGCCAAGCAGCCCCTTGTATGAGTGCCTTTGCTGCGGGTCAAGCTGCAGCTTATAAGATGTTCAAGACTATTGAGAGGAAACCAGAGATAGATTCTTATGATCCAAAAGGGAAAACATTAGAAGATATTCAGGGTGAAATAGAGTTAAGGGAAGTTTATTTCAGTTATCCAGCCAGACCTGAGGAGCAGATTTTCAATGGGTTCTCTCTTAAAATATCAAGTGGCACAACTGCAGCTTTGGTTGGACAAAGTGGAAGTGGAAAGTCTACTGTCATCAGTTTAATAGAAAGATTCTATGATCCACAAGCAGGTGAAGTACTTATAGATGGCATTAACCTGAAAGAATTTCAACTTAAATGGATTAGAGGAAAAATTGGGCTTGTCAGCCAAGAGCCTGTGCTTTTTGCATCTAGCATTAGGGATAACATTGCTTATGGAAAGGAGGGTGCAACAACAGAAGAGATAAAAGTTGCAGCTGAACTTGCCAATGCTGCAAAATTCATTGATAAATTGCCACAGGGATTGGACACAATGGTTGGTGAACATGGAACTCAAATGTCTGGTGGACAGAAGCAGCGTATTGCCATTGCAAGAGCAATTCTCAAAGATCCACGAATACTACTTCTAGATGAAGCTACAAGTGCACTTGATGCAGAGTCTGAAAGGATTGTGCAAGAGGCTCTGGACAGAATTATGACCAACCGAACAACTGTTATCGTGGCACATCGCTTGAGCACAGTGAGGAACGCCGATATGATTGCTGTGATTCATAGAGGGAAGATGGTTGAGAAAGGAACACACACAGAATTACTCCAGGACCCTGAGGGAGCATACTCTCAGCTTATTCGCTTACAGGAAGTGAACAAGGAGTCAGAAGACAGTGTAGAACATCAAAACAAGAGTGAACTTTCCTCAGAATCCTTAAGGCATTCTAATCAAATAAAGTCACTGGGAAGATCCATCAGTAGAGGGTCATCGGTGGGAAACAGTAGCCGCCGCTCATTTTCAGTTTCATTTGGCTTGCCAACTGGAGTTAACATAGCTGATCCTGAAGTCCGAAAAACAGAAACAGAAGAACAAGCACCAAAGGTTCCACTCCGCCGCCTTGCTTATCTCAACAAGCCAGAGATTCCAGTGCTTCTGATTGGATCTGTAGCAGCCATTGTAAACGGTGCCATACTTCCCATATTTGGTATTCTGATTTCCAGTGCGATCAAAGCGTTCTATGAGACACCTGATGAGATGAAAAAGGATTCCGAGTTCTGGGCATTAATGTTTATGACACTCGGTATTGCATCTTTGCTGGCAATTCCAGCACGAGGATACTTTTTTGCTGTCGCTGGATGTAAGTTAATCCAACGTATCAGGCTGATGTGCTTTGAGAAGGTAGTGAACATGGAGGTAGGTTGGTTTGACGAACCTGAGCATTCGAGTGGTGTAATTGGAGCAAGGCTTTCAGCAGATGCAGCAACTGTGCGTGCCCTTGTTGGGGATGCTCTTGGACAACTGGTTGAAAATCTAGCATCATTGTTGGCGGGTTTGATAATTGCTTTCATTGCAAGCTGGCAGTTGGCGTTTATTATTCTTGTATTGCTTCCCCTGATTGGAGTAAACGGATATATTCAAGTGAAATTCATGAAAGGATTCAGTGCAGATGCAAAGATGATGTACGAGGAAGCAAGCCAAGTTGCTAATGATGCTGTCGGGAGTATAAGAACAGTAGCTTCTTTTTGTGCTGAAGAAAAGGTGATGGAACTGTACAGGAAGAAATGTGAAGGGCCTATGAAAACTGGGATACATCAGGGCTTGATCAGTGGAACAGGATTTGGGGTGTCATTTTTTCTTCTATTTTCCGTCTATGCCACTAGTTTCTATGCAGGAGCTAGACTTGTGGACGCCGGTAAAGCAACATTCTCAGACGTTTTTCGGGTTTTCTTTGCTCTGACTATGGCAGCTATAGCAATTTCACAATCGAGCTCTTTTGCTCCCGATTCTGGCAAAGCCAAGTCAGCTGCTGCTTCCATATTTGGAATAATTGATAGGAAATCGATGATAGATCCAAGCGATGAGTCAGGTACCACATTGGATAGCGTGAAGGGAGAAATTGAGCTTCGTCATGTAAGCTTCAAGTATCCATCAAGGCCAGATATACAGATTTTCCGAGACCTTAGCTTGTCTATACGTTCTGGCAAGACGGTAGCCCTTGTTGGTGAAAGTGGAAGTGGAAAATCCACAGTGATCGCATTATTGCAGAGATTCTACGATCCTGATTCAGGTTCAATCACACTTGATGGAATAGAGATTCAAAAGTTACAGCTCAAGTGGCTAAGGCAGCAGATGGGCCTCGTGAGCCAAGAGCCAATATTATTCAATGACACTATTCGTGCCAATATTGCCTATGGAAAGGATGGCAATGCAACAGAAGGAGAAATCATAGCTGCAGCCGAACTGTCCAATGCTCACAAGTTCATTAGCAGCTTACAACAAGGATATGATACAGTAGTAGGAGAGAGGGGAATCCAGTTATCTGGTGGGCAGAAGCAAAGAGTAGCCATTGCACGTGCTACAATCAAAAGTCCAAAGATATTGTTACTAGATGAGGCCACAAGTGCGTTGGACGCTGAGTCAGAGAGAGTGGTTCAAGATGCACTGGATAGAGTGATGGTGAACAGAACCACTGTGGTTGTGGCACATCGTTTATCTACAATAAAGAATGCTGATGTGATTGCTGTGGTTAAAAATGGAGTTATAGTTGAGAAAGGAAGGCACGAGACCTTGATTAACATCAACGATGGATTTTATGCTTCTTTAGTCAAACTTCATACAAGTGCTTCCACAGTATGA 3840 0.4391 MGTENDQNEASTSKNEAGTSTNGENGEQRKQTAETETVPLHKLFSFADSTDILLMVLGTIGAIGNGMGLPLMTLLFGEMINSFGSNQYSADVVDQISKVSLKFVYLAVGSGVAAFLQVACWMVTGERQAARIRGLYLKTILRQDVAFFDKETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLISTFIGGFVISFVKGWLLSLVMLSTIPLLVVSGAAIAVIIGKMASQGQTAYGKAANVVEQTIGAIRTVATFTGEKQAISSYSRFLVDAYKAGVREGFVAGMGLGTVMFVIFCGYALAIWYGAKLIMDNKGYNGGTVINVIFAILTASMSLGQAAPCMSAFAAGQAAAYKMFKTIERKPEIDSYDPKGKTLEDIQGEIELREVYFSYPARPEEQIFNGFSLKISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLKWIRGKIGLVSQEPVLFASSIRDNIAYGKEGATTEEIKVAAELANAAKFIDKLPQGLDTMVGEHGTQMSGGQKQRIAIARAILKDPRILLLDEATSALDAESERIVQEALDRIMTNRTTVIVAHRLSTVRNADMIAVIHRGKMVEKGTHTELLQDPEGAYSQLIRLQEVNKESEDSVEHQNKSELSSESLRHSNQIKSLGRSISRGSSVGNSSRRSFSVSFGLPTGVNIADPEVRKTETEEQAPKVPLRRLAYLNKPEIPVLLIGSVAAIVNGAILPIFGILISSAIKAFYETPDEMKKDSEFWALMFMTLGIASLLAIPARGYFFAVAGCKLIQRIRLMCFEKVVNMEVGWFDEPEHSSGVIGARLSADAATVRALVGDALGQLVENLASLLAGLIIAFIASWQLAFIILVLLPLIGVNGYIQVKFMKGFSADAKMMYEEASQVANDAVGSIRTVASFCAEEKVMELYRKKCEGPMKTGIHQGLISGTGFGVSFFLLFSVYATSFYAGARLVDAGKATFSDVFRVFFALTMAAIAISQSSSFAPDSGKAKSAAASIFGIIDRKSMIDPSDESGTTLDSVKGEIELRHVSFKYPSRPDIQIFRDLSLSIRSGKTVALVGESGSGKSTVIALLQRFYDPDSGSITLDGIEIQKLQLKWLRQQMGLVSQEPILFNDTIRANIAYGKDGNATEGEIIAAAELSNAHKFISSLQQGYDTVVGERGIQLSGGQKQRVAIARATIKSPKILLLDEATSALDAESERVVQDALDRVMVNRTTVVVAHRLSTIKNADVIAVVKNGVIVEKGRHETLININDGFYASLVKLHTSASTV 1279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3560 1279 MobiDBLite consensus disorder prediction 637 666 - -
Dere01g3560 1279 Pfam ABC transporter 398 546 IPR003439 GO:0005524
Dere01g3560 1279 MobiDBLite consensus disorder prediction 620 636 - -
Dere01g3560 1279 CDD ABC_6TM_Pgp_ABCB1_D1_like 55 340 - -
Dere01g3560 1279 CDD ABC_6TM_Pgp_ABCB1_D2_like 702 1017 - -
Dere01g3560 1279 MobiDBLite consensus disorder prediction 620 666 - -
Dere01g3560 1279 SMART AAA_5 1061 1254 IPR003593 GO:0016887
Dere01g3560 1279 SMART AAA_5 406 598 IPR003593 GO:0016887
Dere01g3560 1279 Gene3D - 1024 1278 IPR027417 -
Dere01g3560 1279 Pfam ABC transporter transmembrane region 55 330 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere01g3560 1279 Pfam ABC transporter transmembrane region 712 984 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere01g3560 1279 CDD ABC_MTABC3_MDL1_MDL2 1034 1272 - -
Dere01g3560 1279 FunFam ABC transporter B family member 1 369 618 - -
Dere01g3560 1279 FunFam ABC transporter B family member 1 1024 1274 - -
Dere01g3560 1279 SUPERFAMILY ABC transporter transmembrane region 41 363 IPR036640 GO:0005524|GO:0016020
Dere01g3560 1279 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 713 999 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere01g3560 1279 PANTHER ABC TRANSPORTER B FAMILY 19 620 IPR039421 -
Dere01g3560 1279 FunFam ABC transporter B family member 9 42 376 - -
Dere01g3560 1279 MobiDBLite consensus disorder prediction 1 28 - -
Dere01g3560 1279 FunFam ABC transporter B family member 1 692 1000 - -
Dere01g3560 1279 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 56 344 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere01g3560 1279 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 369 617 IPR027417 -
Dere01g3560 1279 ProSitePatterns ABC transporters family signature. 518 532 IPR017871 GO:0005524|GO:0016887
Dere01g3560 1279 Gene3D ABC transporter type 1, transmembrane domain 101 1008 IPR036640 GO:0005524|GO:0016020
Dere01g3560 1279 SUPERFAMILY ABC transporter transmembrane region 694 1018 IPR036640 GO:0005524|GO:0016020
Dere01g3560 1279 Gene3D - 377 634 IPR027417 -
Dere01g3560 1279 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1024 1271 IPR027417 -
Dere01g3560 1279 CDD ABC_MTABC3_MDL1_MDL2 379 617 - -
Dere01g3560 1279 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 379 615 IPR003439 GO:0005524
Dere01g3560 1279 Pfam ABC transporter 1053 1202 IPR003439 GO:0005524
Dere01g3560 1279 ProSitePatterns ABC transporters family signature. 1174 1188 IPR017871 GO:0005524|GO:0016887
Dere01g3560 1279 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1034 1271 IPR003439 GO:0005524
Dere01g3560 1279 MobiDBLite consensus disorder prediction 1 35 - -
Dere01g3560 1279 FunFam ABC transporter B family member 9 1001 1023 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3560 Dere-ChrDere01 49956843 49962052 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3560 28 1278 Calmodulin-binding Proteins AT2G36910 44.833 0.0 1076