Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3558 ATGCTCTTTTCTCACATGGCGGATGAAGCTTTTCTTTCATGGCAAACAAGGTCCCAATTGGAACCCATCATCGCGCAGCGCGTTCCTGATTTATCCTTCACTAGCTCTCGGTCCTTCAATGATTTTATCACTTTTCAGGAAGCCCAACCAGACCCACAATCCTCATCTCAATTATTGGCTGAGAATGCCCCCAAGAAGAAACTGAGTCGCTGCAAGACTGCTCCTGCCATGGTCGTCTTGCAAGACCTCAGACCAAAAGCACCAGATATTCCCAAACCACAGTCTAGCTCCATCATCAGGCAAGGCATTTGCTTGCTTGTGATATATCTTTCAATTGGGGTTGTCATATACTTTTTCAATCGCGATCATTTTTCGGGCGCCGAGACTAACCCATTTGTTGATGCTCTTTACTTTTGTATAGTCACCATGTGCACAATCGGTTACGGAGACATCACACCTCAAACCCCAGTAACCAAGGTCTTTGCCTGTATCTTCGTATTGGTGGGGTTTGGATTCATCGACATATTGCTGAGTGGGCTTGTCAACTATGTCCTTGATTTGCAAGAGAACATGATTCTAACTGGGCTTCAAATGAGTGCTCAAAGATCTCCGGAAGGCTTCTCTGCAAGAAATTACATAGTTGATGTGGCAAAAGGGCGGATGAGAATCAGATTAAAGGTTGGTTTGGCACTTGGCGTGGTGGTGCTGTGTATTGGAATAGGGACTTTGGTTCTGTACTTTGTGGAGAATTTGAATTGGGTTGATTCAATTTACTTAGCGGTTATGTCTGTAACAACAGTAGGGTATGGAGATAGAGCCTTCAAAACCCTTTCAGGGCGGCTCTTTGCGGCTATTTGGCTCCTTGTTTCCACATTGATGGTGGCCCGGGCCTTCCTGTATTTGGCGGAGGCCAGAATTGATAGAAGGCACCGGAGAATAGCCAAGTCGGTGTTGCATAGAGATATAACTGTTGAGGATTTGCTGGCTGCCGACATCAATCACACTGGTTTCATTAGTAAGTCCGAGTATGTAATATTCAAGCTCAAAGAGATGGGGAAGATACGGGAGAAAGATGTATTGCAAATTTGTGACCAATTCAGCAAGCTTGATCCCACCAACTCTGGGAAGATAACACTAACTCATCTCTTAGGAGGGCCAGTCATGACATAG 1170 0.4521 MLFSHMADEAFLSWQTRSQLEPIIAQRVPDLSFTSSRSFNDFITFQEAQPDPQSSSQLLAENAPKKKLSRCKTAPAMVVLQDLRPKAPDIPKPQSSSIIRQGICLLVIYLSIGVVIYFFNRDHFSGAETNPFVDALYFCIVTMCTIGYGDITPQTPVTKVFACIFVLVGFGFIDILLSGLVNYVLDLQENMILTGLQMSAQRSPEGFSARNYIVDVAKGRMRIRLKVGLALGVVVLCIGIGTLVLYFVENLNWVDSIYLAVMSVTTVGYGDRAFKTLSGRLFAAIWLLVSTLMVARAFLYLAEARIDRRHRRIAKSVLHRDITVEDLLAADINHTGFISKSEYVIFKLKEMGKIREKDVLQICDQFSKLDPTNSGKITLTHLLGGPVMT 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3558 389 SUPERFAMILY EF-hand 329 382 IPR011992 -
Dere01g3558 389 ProSitePatterns EF-hand calcium-binding domain. 331 343 IPR018247 -
Dere01g3558 389 FunFam Two-pore potassium channel 3 210 324 - -
Dere01g3558 389 FunFam Two-pore potassium channel 5 87 197 - -
Dere01g3558 389 Pfam Ion channel 234 303 IPR013099 -
Dere01g3558 389 Pfam Ion channel 105 184 IPR013099 -
Dere01g3558 389 Gene3D - 82 202 - -
Dere01g3558 389 Gene3D - 210 326 - -
Dere01g3558 389 PRINTS Two pore domain K+ channel signature 141 169 IPR003280 GO:0005267|GO:0016020|GO:0071805
Dere01g3558 389 PRINTS Two pore domain K+ channel signature 265 274 IPR003280 GO:0005267|GO:0016020|GO:0071805
Dere01g3558 389 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 130 360 IPR003280 GO:0005267|GO:0016020|GO:0071805
Dere01g3558 389 SUPERFAMILY Voltage-gated potassium channels 95 184 - -
Dere01g3558 389 SUPERFAMILY Voltage-gated potassium channels 218 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3558 Dere-ChrDere01 49942501 49944517 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3558 46 387 Ion Channels AT4G01840 65.706 1.46e-161 458