Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3554 ATGGTGTTATCATTCCGACAACCATGCGCCGACGGGTTTGAATCAGACGGTGAGAACGAAGTGCAAAAGACGTTGCAGACAGAAGGTGAGTTAGATGACGTGCAGAAGTTTACTGGGGTGGCACTTGATGTTGTCGCTGGACTCAACAAACTACTTTCTGCCTTCAACTTGGATTTGAATGTGAAATCTGCTTCTCGACGGCTCCTAGAAGAAGAGGACAAAGATGGGTATCCCACTTGGTTGTCCGCAGCTGATCGCAAGCTCTTGACTGAAGCAGCGCCCAAACCCGACGCAGTGGTTGCCCAAGATGGCAGGGTTCAATTCAAAACCATTACCGATGCTATTAATGCATACCTGAAGGACCTACAAGGCAGATATATTATCTACGTCAAAGCTGGCATTTATAACGAGTCGTCACCATTGACAAGAATAAGCAGAACATTCTCATGTACGGCGATGGCCCTACAAAAACCATTATCACTGGAAATTGATGCGTTGAGCCCAAGAAGCAATAAGAGACCATCACTAGTGCCACCTTTGGTAGGTTGTTACTAA 555 0.4631 MVLSFRQPCADGFESDGENEVQKTLQTEGELDDVQKFTGVALDVVAGLNKLLSAFNLDLNVKSASRRLLEEEDKDGYPTWLSAADRKLLTEAAPKPDAVVAQDGRVQFKTITDAINAYLKDLQGRYIIYVKAGIYNESSPLTRISRTFSCTAMALQKPLSLEIDALSPRSNKRPSLVPPLVGCY 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3554 184 Pfam Pectinesterase 97 138 IPR000070 GO:0030599|GO:0042545
Dere01g3554 184 SUPERFAMILY Pectin lyase-like 92 142 IPR011050 -
Dere01g3554 184 PANTHER PECTINESTERASE 2 138 - -
Dere01g3554 184 Gene3D - 56 153 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3554 Dere-ChrDere01 49927653 49928207 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3554 3 143 Carbohydrate Esterase AT5G49180 34.459 3.16e-19 82.4