Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3550 ATGAATAAGGTACTTGTGCCCGCGGTTGCACTCATCCTAGTGGTGGGTTGTGCTGTGGGGACAATTCTCGTTGCGAGACAAAATAAAAGTAATGATGGTGGAGATAGTGGGTTGAGCTCCCACAATAAGGCTGTGACGGTCATATGCCAAGGCTCAGACCAGCAAAAGGATTGCGAAGACACTTTGAACTCCATTAACTCCTCAGATCCAAAGGATTACATCAAGACGGCGGTGGAAAAAGCAATGGGAACAGTGATAAAGGCCTTCAACATGAGCGACAGGCTCACAGTCGAACATAGCAAGGGTGATAACCAAGGAGTGAAGATGGCCGTGGAGGACTGCAAGGACTTGATGGAGTCAGCCATTGATTCACTACAGGCCTCCAATGCTATGTTGAAAAACAACGACATTAGAAGTATCCAAGAAAGAACCGATGACATCAGGAATTGGTTGGCGATGGTGTTATCATTCCAACAATCGTGTGCCGATGGATTTGAATCAGACGGTGAGAAAGAGGTGCAAAAGACGTTGCAGACAGAAGGTGGGTTGGACGATGTGCAAAAGTTTACTGGAGTGGCACTTGATGTTGTCGCTGGACTCAACAAACTGCTTTCTGCCTTCAACTTGGATTTGAACGTGAAATCTGCATCCCGACGGCTCTTGGAAGAAGAGGACAAAGATGGGTATCCCACTTGGTTGTCCGCAGCTGATCGCAAGCTTTTGGCCGAAGCAGCGCCTATACCCAATGCAGTGGTTGCCCAGGACGGCAGTGGTCAGTTCAAAACAATTACCGATGCTGTTAATGCATACCCGAAGAACTTTCAAGGCAGATATGTTATCTACGTCAAAGCTGGCATTTATAAGGAGTACGTCACCATTGACAAGAATAAGAAGAACATTCTGATGTACGGTGATGGCCCAGAAAAAACCATTATCACCGGAAATAGATGCGTGGAGCCGAAGAAGCAGTACAAGACCATGACTAGTGCCACCTTCGGTATGTTGTTATTACACACAATTGTTTTAAACATTAGAGAAAGGAACTAG 1047 0.4613 MNKVLVPAVALILVVGCAVGTILVARQNKSNDGGDSGLSSHNKAVTVICQGSDQQKDCEDTLNSINSSDPKDYIKTAVEKAMGTVIKAFNMSDRLTVEHSKGDNQGVKMAVEDCKDLMESAIDSLQASNAMLKNNDIRSIQERTDDIRNWLAMVLSFQQSCADGFESDGEKEVQKTLQTEGGLDDVQKFTGVALDVVAGLNKLLSAFNLDLNVKSASRRLLEEEDKDGYPTWLSAADRKLLAEAAPIPNAVVAQDGSGQFKTITDAVNAYPKNFQGRYVIYVKAGIYKEYVTIDKNKKNILMYGDGPEKTIITGNRCVEPKKQYKTMTSATFGMLLLHTIVLNIRERN 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3550 348 SUPERFAMILY Pectin lyase-like 248 335 IPR011050 -
Dere01g3550 348 CDD PMEI-like_3 48 202 - -
Dere01g3550 348 Coils Coil 115 135 - -
Dere01g3550 348 SMART PMEI_2 40 196 IPR006501 GO:0004857
Dere01g3550 348 PANTHER PECTINESTERASE 15 341 - -
Dere01g3550 348 Gene3D Invertase/pectin methylesterase inhibitor family protein 41 202 IPR035513 -
Dere01g3550 348 NCBIfam pectinesterase inhibitor domain 39 177 IPR006501 GO:0004857
Dere01g3550 348 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Dere01g3550 348 Pfam Pectinesterase 249 335 IPR000070 GO:0030599|GO:0042545
Dere01g3550 348 Pfam Plant invertase/pectin methylesterase inhibitor 45 195 IPR006501 GO:0004857
Dere01g3550 348 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 43 197 IPR035513 -
Dere01g3550 348 Gene3D - 245 348 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3550 Dere-ChrDere01 49866248 49867294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3550 1 331 Carbohydrate Esterase AT2G47030 32.880 2.45e-49 172