Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3548 ATGGCTGGAGATGCGGGTGAAACCAACTACAATGCCACCGATTCTGCGCCGGTGGAGGCCGATCGCGGAAGAGCGGAACCGCAATACGCGTCGGCGAAGATATCGGTGTGGTGGGACATAGAGAATTGCCAGGTTCCAAAGGGTTGCGACCCGCATGCCATTGCCCAGAATATTAGTTCAGCACTCGTCAAGATTAACTATTGTGGCCCCATCTCCATCTCCGCCTACGGCGACACTAGTCTCATCCCATGTTCTGCTCAGAAGGCACTTTCTAGTACCGGAGTTTCCCTCAACCACGTTCCAGCCGGTGTGAAAGATGCCAGTGATAAGAAAATTCTAGTTGATATGTTGTTCTGGGCAATAGACAACCCTGCTCCAGCAAATTATTTGCTGATCTCTGGTGATAGGGATTTTTCATATGCTTTACATCAGTTGCGCTTGCGAAGATACAACATTCTTCTAGCACAACCACTGAAAGCATCAGCTCCCCTAGTTGCAGCAGCGAAAAGTGTTTGGCTCTGGATGGGTCTTTCATCTGGTGGGGCCCCACTATCTAGTGGTGAATCATCACGCCTTGCAAGTGGTAACCATGTCTTTAATTCTGAGAGGATTAGAAGCCCTGTTACCGAGCTAAGTCAATCAAATGAGCTAACGGTTTTCAATTCTGAAGACCTTGCCATGAGCAGTCAAATGACCTATACTACTGAAAGTGTTGGTATTTTGAAACTCGAAGGAAAATATATTTCGAAAACTGAACATCAGCCCAACATATCAAGATCGTCAGGCTTACCCATTATAGTGTCAGAGTCAGATTTTAAGAACAATGATCCTTTAAAACCTGCAAAGTTACCGATGAAGCCGTTTCGGAAAGCCCCGCATGAATTCTTTCGCAGTGAGCCCATAGTCCAAAACAGTAGGTCTACTAATCTTCCCATCAACCAAGATTTCTTAGGAAATAATAGGCGCAACTCTAATGAAATCCCTTGGGATCTTTGTTATAGTTCTTTGAGGTCAAACAACCTCCAACTGCAATCTACGTCTGGACCAGATAATTTGCCTCTTCCTGTATCGCATACTCCTATATTTCAGCCAACGCCTTCTTATTTTGATGGATCTAAATTGTCTGCAGTCCCAAATTCAACTCCTGATATACAGAAGCTACATATTTCGCAGCATCCTAACAATGTTAGAAGTACTCCTATTTTCCATCAGCCAACCTGGGAAGATTCTAAACCAAGCACTACTCAATCTCCTAATCTACATAGTTTATATGCATCATCAACAGGCCATGACCCTCCTGGTGGCCAATCATTACATTATACGAATTTCAACCAGAGGCATCCTCGTGGTCCTGAACATATGCTTTCTTCGTCCTCCACTGAAATTGTCAATACCAGTTCTAATGATGTCGTTGGGGGAGTTCAGAGATGTCCACCACCTTCCGAGTATGCGCACCTAATTGGTGCTATTCTACTAGCCTTAAACACTCTGAAGGTTGAAAAGATTATGCCTACTGAAGCAAATATAACCGATTGCATTTCTTATGGAGATCCCAGGTATCGAACTATTGATGTCAAGAAGGCCTTGGATTGTGCAATCAAGCAAAGTATGGTAGTAAAACAAAGCGTAGGTGCATTACAGTTTTATGTTGTCAGAAACGAGAAACTATGGAAGTGTGTGAACCCTATAGGTGGTAGTCTTAGTCAGTACCCAAAAACAACATGGGATGGAATACAAAAATTCCTTACTTCAGCATCTGGACGGTCAGCAATTTTCGCTTCCCGGTGCAGATATGAAGCATCTTTAATTCTAAGGAAAGAATGTCTTAAAGAGCTCTTGTTAGGTAATGTACTTCAGATCTTGAATATGATCATCGCTGTCAAGAAATGGATTATACATCATCAGTCTGGATGGCAGCCAATAGCTATTACGCTTACAGGCACTAGAGATGATACCGGCAGTGGTGCCGGTGTTAAAGTAATTTTTGCTTGA 1992 0.4337 MAGDAGETNYNATDSAPVEADRGRAEPQYASAKISVWWDIENCQVPKGCDPHAIAQNISSALVKINYCGPISISAYGDTSLIPCSAQKALSSTGVSLNHVPAGVKDASDKKILVDMLFWAIDNPAPANYLLISGDRDFSYALHQLRLRRYNILLAQPLKASAPLVAAAKSVWLWMGLSSGGAPLSSGESSRLASGNHVFNSERIRSPVTELSQSNELTVFNSEDLAMSSQMTYTTESVGILKLEGKYISKTEHQPNISRSSGLPIIVSESDFKNNDPLKPAKLPMKPFRKAPHEFFRSEPIVQNSRSTNLPINQDFLGNNRRNSNEIPWDLCYSSLRSNNLQLQSTSGPDNLPLPVSHTPIFQPTPSYFDGSKLSAVPNSTPDIQKLHISQHPNNVRSTPIFHQPTWEDSKPSTTQSPNLHSLYASSTGHDPPGGQSLHYTNFNQRHPRGPEHMLSSSSTEIVNTSSNDVVGGVQRCPPPSEYAHLIGAILLALNTLKVEKIMPTEANITDCISYGDPRYRTIDVKKALDCAIKQSMVVKQSVGALQFYVVRNEKLWKCVNPIGGSLSQYPKTTWDGIQKFLTSASGRSAIFASRCRYEASLILRKECLKELLLGNVLQILNMIIAVKKWIIHHQSGWQPIAITLTGTRDDTGSGAGVKVIFA 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3548 663 Pfam NYN domain 33 169 IPR021139 GO:0004540
Dere01g3548 663 Pfam OST-HTH Associated domain 590 646 IPR025677 -
Dere01g3548 663 MobiDBLite consensus disorder prediction 401 456 - -
Dere01g3548 663 Gene3D - 28 175 - -
Dere01g3548 663 MobiDBLite consensus disorder prediction 401 444 - -
Dere01g3548 663 PANTHER LIMKAIN B LKAP 22 534 IPR024768 GO:0005777|GO:0010468
Dere01g3548 663 CDD PIN_limkain_b1_N_like 33 157 - -
Dere01g3548 663 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3548 Dere-ChrDere01 49820315 49823422 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3548 25 213 C2H2 Transcription Factor Family AT5G61190 71.204 8.90e-83 280
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3548 01 49820315 49823422 Dere01g3548 01 49820315 49823422 ECH