Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3547 ATGGAAGATAGATTTGGCACAGAAGCTTTTCACTTGTATGGTATTGGTTCCTCGGATTTGCGGGCCGTGGGGAAGAGGTCCATCGAGTGGGATTTGAACGATTGGAAATGGGATGGTAATCTTTTTATAGCTAGCCCGCTGACACCAGTGCCAGAAGATAGCGTAGGCCGACAATTTTTTCCTCTTGGGTCGGGGATCCCCATGGCCGGAGGCTCCTCCAACAGTTCTTCCTCCTGCTCCGATGAAGTAAATCTAGGGTTTGACAAGAGGAAGAAGGAAGGAGAGAGGAAAAGGAGGGTTGTTGTGGTGGATGATGACAGTTTAAATGAGGAAACAGGTAGCCTTAGCTTAAAGCTTGGTGGACATGATTCTCCAATTGCTGATAGGGAGATAGCAAGTTATGAAGGAATGAATGGAAAGAAAACCAAATTAACTGGAGGTACTTCGAATAGAGCTGTTTGTCAAGTGGAGGACTGCGGTGCAGATCTGAGCAGTGCTAAGGATTATCATAGACGTCATAAGGTTTGTGAGATGCACTCAAAGGCCAGTAGAGCTCTTGTAGGAAATGTAATGCAACGGTTCTGTCAGCAATGTAGTAGGTTTCACATCCTTCAGGAGTTTGATGAAGGGAAGAGAAGCTGTCGAAGACGCCTGGCAGGCCACAATAAGAGAAGGAGGAAAACAAATAATGATACTATTCCTAATGGAAGTCCAATAAATGATGATCAGACTAGTAGTTATCTGTTGATTAGTTTATTGAAGATACTTTCAAATATGCATTCTAACAGGTCAAATCAGACCACAGATCAGGATATGCTGTCTCATCTTCTAAGGAGCCTTGCTAGCCCGAATGGTGAACATGGGGGCAAGAGTTTGTCTAACCTTTTGCAGCAACCAGAGAATTTGTTGAAAGAAGGGACTTCTCCTGGGAAGTCAGAAATGGTTTCTGCTTTATTCTCAAATGGTTCTCAGGGCTCTCCAACTGTTACAAGACAACCGCAAACAATATCTATAACTGAAATTCAACATCAAGGGACTCATGATGCTAGAGCTGCTGATCAACAAACCATGTCTTCTAATAAACCTAGCACATCAAACAGTCCTCCATCTTATTCAGAAGCCAGGGACAGTGTCGCTGGACAAGTCAAGGTAAATAATTTTGATTTGAATGACATATATGTTGACTCAGATGATGGCATGGAAGATATAGAAAGGTTGCCTGTCTCTGCAAACCTTGGGGCTACTTCTCTTGATTACCCATGGGCACAACAAGCCTCTCATCAGTCAAGTCCACCTCAGACAAGTGGAAATTCAGATTCTGCATCTGCCCAGTCCCCTTCTAGTTCAAGTGGAGAAGCTCAGAGCCGGACAGATCGAATTGTTTTTAAACTCTTTGGTAAAGAACCAAATGATTTTCCTCTGGTACTTAGAGCACAGATTCTTGACTGGCTATTACAGAGTCCTACTGACATTGAGAGCTACATACGGCCTGGATGTATTGTTTTGACCATTTATCTGCGTCAAGCTGAGGCTGTGTGGGAGGAACTTTGCTATGATCTGACTTCAAGTTTGAATAGGCTTCTTGGTGTCTCAGATGATGCCTTTTGGAGAACTGGATGGGTTTACACAAGGGTGCAGAATCAGATAGCCTTCATTTTCAATGGCAAGGTTGTCATAGATACATCCTTACCTTCCAGAAGTAACAATTATAGTAAGATTTTGAGTGTTAGCCCAATTGCTGTACCACCACACAAAAGAGCTCAATTTTCAGTCAAGGGTATTAATCTGATTCGCCCAGCTACTAGGTTATTATGTGCTCTAGAAGGGAAATATATGGTCTGCGAAGATGGTCATGAGCCAACGGAGCAGTGCTTCAAAGAACCTAATGAGATCCAGTGTGTCCAATTTTCCTGTTCTGTTCCTGTGATGAACGGAAGAGGGTTTATTGAGATCGAGGACCAGGGATTGAGCAGCAGCTTTTTTCCATTTATAGTTACAGAAGAGGATGTTTGCTCAGAAATCTGTGCACTTGAGCCTCTCATAGAATCAGGCAGAGTGGATTCTGATATTGGTGAATCTGGAAAAATTACAGCCCTAAGTCAGGCTATGGATTTTATTCATGAAATGGGTTGGTTTCTCCACAGAAACCAATTGAAATCTAGGCTGGATCACCTAAATTATCGTGCATATCTTTTCCCATTAAATCGGTTCAAGTGGCTCATGGAGTACTCTATGGACCATGATTGGTGTGCAGTGGTGAAGAAACTATTGAACCTACTACTTGAGGGAACAGTGGATGCGGGAGATCACCCTTCCCTGTATATTGCACTTTCAGAGATGGGTCTCCTTCATAAAGCTGTAAGGAGAAATAGCAGGAAGTTGGTGGAGTTGCTTCTGAGATATGTACCTGAGAATATTTCTGATGAGTTTGGACGACAAAACAAGGCACCAGTTGACATTGGGAACCAGAGCTTCTTGTTTAGACCTGACACTGTTGGTCCTGCAGGCTTAACACCACTGCACATTGCAGCTGGCAAAGATGCTTCTGAGGATTTATTGGATGCTTTAACTAATGATCCTTGCATGGTGGGAATTGAAGCATGGAAGACTGCCCGTGACAGCACAGGCTCCACACCTGAGGATTATGCGCGCTTGCGTGGCCATTATGCTTACATTCACCTAGTGCAGAAGAAAATCAACAAGAGACAACCAGCAGCAGCTCATGTGTCAGTGGATATCCCCAGCAATCTGACAGACTGTGGTACAAACCAGAAGCAAACTGAGCCAACCACTAGCTTTGAGATTGGAAAGGCTGAAAGATGCCATGTGCAAAGGCACTGCAAACTCTGTGATCATAAATTGTCTTGTAGAACTGCAGTTGGAAGGTCTTTGGTATACAAACCTGCCATGCTCTCGATGGTGGCCATAGCAGCAGTCTGTGTCTGCGTGGCCCTGCTGTTTAAAAGCTCACCTGAAGTTCTGTATGTGTTCCAACCCTTCAGGTGGGAATCATTGGATTTCGGAACAAGCTGA 3033 0.4392 MEDRFGTEAFHLYGIGSSDLRAVGKRSIEWDLNDWKWDGNLFIASPLTPVPEDSVGRQFFPLGSGIPMAGGSSNSSSSCSDEVNLGFDKRKKEGERKRRVVVVDDDSLNEETGSLSLKLGGHDSPIADREIASYEGMNGKKTKLTGGTSNRAVCQVEDCGADLSSAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHILQEFDEGKRSCRRRLAGHNKRRRKTNNDTIPNGSPINDDQTSSYLLISLLKILSNMHSNRSNQTTDQDMLSHLLRSLASPNGEHGGKSLSNLLQQPENLLKEGTSPGKSEMVSALFSNGSQGSPTVTRQPQTISITEIQHQGTHDARAADQQTMSSNKPSTSNSPPSYSEARDSVAGQVKVNNFDLNDIYVDSDDGMEDIERLPVSANLGATSLDYPWAQQASHQSSPPQTSGNSDSASAQSPSSSSGEAQSRTDRIVFKLFGKEPNDFPLVLRAQILDWLLQSPTDIESYIRPGCIVLTIYLRQAEAVWEELCYDLTSSLNRLLGVSDDAFWRTGWVYTRVQNQIAFIFNGKVVIDTSLPSRSNNYSKILSVSPIAVPPHKRAQFSVKGINLIRPATRLLCALEGKYMVCEDGHEPTEQCFKEPNEIQCVQFSCSVPVMNGRGFIEIEDQGLSSSFFPFIVTEEDVCSEICALEPLIESGRVDSDIGESGKITALSQAMDFIHEMGWFLHRNQLKSRLDHLNYRAYLFPLNRFKWLMEYSMDHDWCAVVKKLLNLLLEGTVDAGDHPSLYIALSEMGLLHKAVRRNSRKLVELLLRYVPENISDEFGRQNKAPVDIGNQSFLFRPDTVGPAGLTPLHIAAGKDASEDLLDALTNDPCMVGIEAWKTARDSTGSTPEDYARLRGHYAYIHLVQKKINKRQPAAAHVSVDIPSNLTDCGTNQKQTEPTTSFEIGKAERCHVQRHCKLCDHKLSCRTAVGRSLVYKPAMLSMVAIAAVCVCVALLFKSSPEVLYVFQPFRWESLDFGTS 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3547 1010 MobiDBLite consensus disorder prediction 302 379 - -
Dere01g3547 1010 Pfam SBP domain 154 227 IPR004333 GO:0003677
Dere01g3547 1010 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 75 894 IPR044817 GO:0003677
Dere01g3547 1010 MobiDBLite consensus disorder prediction 422 454 - -
Dere01g3547 1010 MobiDBLite consensus disorder prediction 218 240 - -
Dere01g3547 1010 MobiDBLite consensus disorder prediction 313 374 - -
Dere01g3547 1010 ProSiteProfiles Zinc finger SBP-type profile. 151 228 IPR004333 GO:0003677
Dere01g3547 1010 Gene3D - 739 928 IPR036770 -
Dere01g3547 1010 FunFam Squamosa promoter-binding-like protein 14 145 215 - -
Dere01g3547 1010 SUPERFAMILY SBT domain 152 233 IPR036893 GO:0003677|GO:0005634
Dere01g3547 1010 SUPERFAMILY Ankyrin repeat 771 895 IPR036770 -
Dere01g3547 1010 Gene3D - 145 215 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3547 Dere-ChrDere01 49789561 49797082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3547 24 1010 SBP-box Gene Family AT3G60030 56.207 0.0 978
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Dere01g3547 SBP 1.5e-29 No_clan