Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3546 ATGGACGACTGTTGTGCGGTTTGTGCGGAACCTTTGGAATGGGTTGCGTACGGTCCCTGTTTGCATCGGGAGGTTTGTTCGACCTGCGTAGCTCGTCTCCGTTTCATATGCGACGATCGCCGTTGCTGTATCTGCAAGACCCAGTGCGACTTTGTATTCGTCACCAAGGCTCTAGGGGACTTTACAAGGATGATTAATGACTTCTCAGTGCTGCCATCTGATGTAAGGGAGGGTCAAATGGGTTCATACTGGTACCATGAAGATACAAATGGTTATTTTGATGATGTGGACCACTACAAGATGATCAAGGCCATGTGCAAGCTTTCATGTAGTGTGTGTGACAAGATGGAGGAGCAAGCACGTGATGCCTCGAAGCGTCGAGCAAGGTTTAGGAATATAGAGCAGCTAAAGGGTCACTTGTTCCGCTGTCACAGGTTGCTTATGTGCAGTTTATGTTTGGAAGGAAGAAAGGTATTCATATGTGAACAAAAGCTGTATACTAGAGCACAGTTAAATCAGCATATAAGCACAGGTGATTCTGAGGTGGATGGAAGTGAGAGTGAGAGAGGTGGTTTTATGGGGCATCCTATGTGTGAGTTCTGCCGAACCCCATTTTATGGGGATAATGAACTTTACACACATATGTCAACAGAACATTTTACTTGTCATATATGCCAAAGGCAGCATCCAGGACACTATGAATACTTTAAGAATTATGATGACCTAGAGACCCACTTCCGTCAAGAGCACTTCTTATGTGAAGATGAGGCTTGCCTTGCTAAAAAGTTCATTGTATTTCAATCTGAAGCAGAGATGAAGAGGCATAATGCTATTGAACATGGAGGGCGTATGTCACGGTCAAAACGCAATGCTGCTCTTCAGATACCAACTAGTTTTCGATACAGCCATGGTAATCAACAAGACCAACGCCGTGGAAGAGGTCGGACATTTCGTCGTGATCCTTCTGAAAGTGAACTTTCTATGGCCATTGAAGCCAGTTTTGAGACAGCTAATGCAGAGAGCACGATTCATGATCCAGCAACATCAAGCAGTGGACAAGTTGCTCTTGGTTATGGGAATGTTGATGGTGATCCAGCCATCCAGCCATCTGAATCCTTAGCTTCGTCGAGTTCTGAATTGTCTTCAAGATATCTTCAAGCCTTGGGGCAAAATTCAAGGAGTTCACCATTGGAAGAGTCCTCTTTTCCTCCACTTCCCATTGCTTCAATCAATGGCCAATCAAAGCCCAAACATGAGCTAGAAGGTTCATCTAGTGGCACCATGGCAGCACATTTGCGCCGGCATAGAAATGTATCTGTTCTTAATTCTGCTCATGGTTGGCCAGTGGCAAGTCGTGGATCTGTGCAAGCTTCAAGTAATCCTACACAATCTAGGAAGCCAACAAATGTTGCTCCTGCACTGTCAGGCAATTCCAGTCAGACAAGGACTGCCATTAATCGAGGACCTGCTGCATCAACCTATGCTAGCTCTATTCAAGCCACACAGAGAACTGCTCATGGACATTTATCTCCTGGCTCTTCAAGGGAAATGCGCGACAATGGTAGAATTGTTCATTCTGTATCTGCTCCAAATCTCATTGAAAGCAGTCCTTCAGAACCTTCATTTTCTGATTTTCCTCCAGTGTCTGCTGCACAAAAGCTGCCTGGAAGCAGCCAGTCTTTGACGAATGTGAAGGATGTTCATACTGCTAACAAGTCCATGGTTGAAAAGATTCGTAGTGCTCTTGATTTTGATCAAGATAGATACTCTATTTTTAAAGATATTTCTGCACAATATCGCCAAGGAATAATTGATACAGGCACATATTTGGATTATGTGCAGCAGTTTGGCTTGTCTCATCTTGTACTTGAGTTGGCTAGACTATGCCCTGATCCACAGAAGCAGAAAGAACTTGTTGATTCCTATAATGCTAGTTTACAAAGAAATGCTTTACAAGACGATGATTGGGGCCATGGTAGTATACATCGCAAAGATGGCAATGTCTCCAAGAAAGGTAAAGGTAAAGGAAAGTCTGTAGATATTGAAGAGAGGACCTCCAAAGAGAAATTAGAAGATAGCTTTTTAAGCACAGTACGCCAATTACAGTTGAATTATCAACCTTCAGAAGAGAATGCGGAGGTACTATCAAAGGGTGATTACCGGACTGCTGAAGGCAAATCAAAAGTTTTGGTAAATAAACAGCCGATGGGTATAAATTCTAGTAGTCAACCCGTCGCAAAGCTTAATGGGCTGAGTGAAGCATCAGTTGGTAGTTTATCTAACCAGAATAAAGATGATGGGGTTGGTGGGAGCAAGCAACGCAAGAAAAATTCAAAGTTCCTCAGAGTCCGCCTTGGTGATCGTTCTGCAGAAGCATTTGATCTTAGAAGATCAAATACTAACTCTGATCCTGTATCAACGGATAGCTTGGAAAATAACAAGAGTGATTCCGGAGGGTTGCCTGTGCGAGGTGTTTGGCGGAATGGGGGAGGTCATAAACTCTTTCCCTAG 2511 0.4373 MDDCCAVCAEPLEWVAYGPCLHREVCSTCVARLRFICDDRRCCICKTQCDFVFVTKALGDFTRMINDFSVLPSDVREGQMGSYWYHEDTNGYFDDVDHYKMIKAMCKLSCSVCDKMEEQARDASKRRARFRNIEQLKGHLFRCHRLLMCSLCLEGRKVFICEQKLYTRAQLNQHISTGDSEVDGSESERGGFMGHPMCEFCRTPFYGDNELYTHMSTEHFTCHICQRQHPGHYEYFKNYDDLETHFRQEHFLCEDEACLAKKFIVFQSEAEMKRHNAIEHGGRMSRSKRNAALQIPTSFRYSHGNQQDQRRGRGRTFRRDPSESELSMAIEASFETANAESTIHDPATSSSGQVALGYGNVDGDPAIQPSESLASSSSELSSRYLQALGQNSRSSPLEESSFPPLPIASINGQSKPKHELEGSSSGTMAAHLRRHRNVSVLNSAHGWPVASRGSVQASSNPTQSRKPTNVAPALSGNSSQTRTAINRGPAASTYASSIQATQRTAHGHLSPGSSREMRDNGRIVHSVSAPNLIESSPSEPSFSDFPPVSAAQKLPGSSQSLTNVKDVHTANKSMVEKIRSALDFDQDRYSIFKDISAQYRQGIIDTGTYLDYVQQFGLSHLVLELARLCPDPQKQKELVDSYNASLQRNALQDDDWGHGSIHRKDGNVSKKGKGKGKSVDIEERTSKEKLEDSFLSTVRQLQLNYQPSEENAEVLSKGDYRTAEGKSKVLVNKQPMGINSSSQPVAKLNGLSEASVGSLSNQNKDDGVGGSKQRKKNSKFLRVRLGDRSAEAFDLRRSNTNSDPVSTDSLENNKSDSGGLPVRGVWRNGGGHKLFP 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3546 836 Coils Coil 113 133 - -
Dere01g3546 836 MobiDBLite consensus disorder prediction 655 683 - -
Dere01g3546 836 MobiDBLite consensus disorder prediction 338 356 - -
Dere01g3546 836 ProSiteProfiles Zinc finger RING-type profile. 5 46 IPR001841 -
Dere01g3546 836 MobiDBLite consensus disorder prediction 451 519 - -
Dere01g3546 836 MobiDBLite consensus disorder prediction 531 545 - -
Dere01g3546 836 MobiDBLite consensus disorder prediction 653 683 - -
Dere01g3546 836 MobiDBLite consensus disorder prediction 338 375 - -
Dere01g3546 836 MobiDBLite consensus disorder prediction 795 816 - -
Dere01g3546 836 CDD RING-HC_ZNF598 3 54 IPR041888 -
Dere01g3546 836 MobiDBLite consensus disorder prediction 531 560 - -
Dere01g3546 836 MobiDBLite consensus disorder prediction 388 426 - -
Dere01g3546 836 MobiDBLite consensus disorder prediction 306 325 - -
Dere01g3546 836 MobiDBLite consensus disorder prediction 296 325 - -
Dere01g3546 836 MobiDBLite consensus disorder prediction 756 836 - -
Dere01g3546 836 MobiDBLite consensus disorder prediction 780 794 - -
Dere01g3546 836 MobiDBLite consensus disorder prediction 452 509 - -
Dere01g3546 836 SMART c2h2final6 108 144 IPR013087 -
Dere01g3546 836 SMART c2h2final6 220 250 IPR013087 -
Dere01g3546 836 SMART c2h2final6 251 280 IPR013087 -
Dere01g3546 836 SMART c2h2final6 196 219 IPR013087 -
Dere01g3546 836 PANTHER ZINC FINGER PROTEIN 598 1 759 IPR044288 GO:0061630|GO:0072344
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3546 1 835 C2H2 Transcription Factor Family AT3G62240 52.656 0.0 817
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3546 01 49779240 49784827 Dere01g3546 01 49779240 49784827 ECH