Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3543 ATGCCGTGGGAAAGCGGAATTCAACCTCAATCTCAAACACAGGCCTCCCTCCTTCCTCTGCATCCGAAGATGCAGATCTTTGTGAAAACCTTAACGGGGAAGACGATAACCCTGGAGGTTGAATCGTCCGATACAATTGACAATGTAAAGGCCAAAATCCAAGATAAAGAAGGCATCCCTCCTGATCAACAACGCCTCATCTTCGCCGGTAAGCAGCTCGAAGATGGCCGAACCCTTGCTGACTACAACATCCAGAAGGAGTCCACCCTCCACCTCGTTCTTCGTCTGCGTGGTGGCGCCAAGAAGCGGAAGAAGAAGACTTACACGAAGCCCAAGAAGATCAAGCACAAGAAGAAGAAGGTGAAGCTCGCTGTTCTACAGTTCTACAAGGTCGATGATTCTGGCAAGGTCCAGAGGTTGAGAAAGGAATGCCCCAATGCTGAGTGTGGCGCAGGCACCTTCATGGCCAATCACTTTGACAGGCACTATTGTGGTAAGTGTGGCCTCACCTACGTTTATCAACAAGCCGGCGGTGATTGA 540 0.5037 MPWESGIQPQSQTQASLLPLHPKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQQAGGD 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3543 179 ProSiteProfiles Ubiquitin domain profile. 24 99 IPR000626 GO:0005515
Dere01g3543 179 SMART Ribosomal_S27_2 125 170 IPR002906 GO:0003735|GO:0005840|GO:0006412
Dere01g3543 179 Gene3D - 24 103 - -
Dere01g3543 179 Pfam Ubiquitin family 26 97 IPR000626 GO:0005515
Dere01g3543 179 ProSitePatterns Ubiquitin domain signature. 50 75 IPR019954 -
Dere01g3543 179 PRINTS Ubiquitin signature 55 75 IPR019956 -
Dere01g3543 179 PRINTS Ubiquitin signature 34 54 IPR019956 -
Dere01g3543 179 PRINTS Ubiquitin signature 76 97 IPR019956 -
Dere01g3543 179 SMART ubq_7 24 95 IPR000626 GO:0005515
Dere01g3543 179 CDD Ubl_ubiquitin 24 99 - -
Dere01g3543 179 Pfam Ribosomal protein S27a 125 170 IPR002906 GO:0003735|GO:0005840|GO:0006412
Dere01g3543 179 SUPERFAMILY Ubiquitin-like 12 100 IPR029071 -
Dere01g3543 179 FunFam Ubiquitin-40S ribosomal protein S27a 24 102 - -
Dere01g3543 179 PANTHER UBIQUITIN 24 112 - -
Dere01g3543 179 Gene3D - 104 177 IPR038582 -
Dere01g3543 179 SUPERFAMILY Zn-binding ribosomal proteins 123 176 IPR011332 GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3543 Dere-ChrDere01 49764491 49765772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3543 24 177 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 95.455 1.55e-90 259