Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3538 ATGGTGGCTGAAGCAGACTTTGTTTGTCAACAGAGCGTGCCTCTGTTGGATGTACAGCATATTCCTGTAGGAAGCAGTATTCCCGAGATCGAAGATGCACCTTCCGTCTCGCTCTCACTCATGCCTTCCAGTTCTGACAGAGGTCGTACTTCCGAATTTGTCTCTGCCCAGTTACTGAATTCACAAGAAGATGTTAGACCTGTAGACCAAATTCTCAATGCTGCTCTGGACACCGCTGTTCTGCAATTTGTACCCAGCATCCGTTCGGGAAGTTTTGCTGACATTGGGCCACGGAAATACATGGAAGATGAACATATGAGGATAGATGATTTGTCTTCCCACCTGGGATCACTCTATAAATTCCCTAAACCAAGTGCCTTCTATGGGGTTTTTGACGGTCATGGAGGACCTGAAGCTGCAGTTTATATCCGAAATAATGTGTTAAGATTCATTTTTCGAGATGTCAGCTTCCCCCAGTCATCTGAAGTTGATAATGTTTTCTTACACGAAATAGAGAACTGTCTCAGGAAGGCATTTCTTTTGGCGGACTCAGCTTTGGCTGATGATTGTAGTGTGAGCAGCTCATCAGGGACCACAGCGCTTACAGCTTTAATATATGGAAGGCTTCTCATGGTGACCAATGCTGGTGATTGCCGAGCAGTTCTGTGCCATAAAGGCGAGGCAATTGACATGTCTCAAGACCACAGGCCTATATATCCATCGGAACGGAGGCGCGTTGAAGAATTAGGTGGTTACATAGATGACGGTTATCTTAATGGGGTATTATCAGTTAGTCGAGCTCTAGGGGACTGGGATATGAAGCTCCCACAGGGTTCTCCCTCACCTCTGATTGCAGAGCCTGAGTTCCGGCAAGTAATTTTAACAGAGGAGGATGAATTTCTCATCATTGGATGTGATGGGATTTGGGATGTGATGTCAAGTCAGCATGCAGTGAGCCTTGTTCGTAGAAGCTTGAGGAGGCATGACGATCCAGAGAAGTGCGCCAGAGACCTAGTTATGGAGGCCTTGCGCCTGAACGCTTTTGACAATCTCACAGTCATTGTTGTGTGCTTCACATGCCCTGATCCCAGGGAGCTATCCCCGCCTCACAGGTCGGGACGCTTCTCCGCAGAGGCATTTCGTAGCTTGAGAACTTTGTTGGAAGGTAGTGCTAGCAAATGA 1182 0.4729 MVAEADFVCQQSVPLLDVQHIPVGSSIPEIEDAPSVSLSLMPSSSDRGRTSEFVSAQLLNSQEDVRPVDQILNAALDTAVLQFVPSIRSGSFADIGPRKYMEDEHMRIDDLSSHLGSLYKFPKPSAFYGVFDGHGGPEAAVYIRNNVLRFIFRDVSFPQSSEVDNVFLHEIENCLRKAFLLADSALADDCSVSSSSGTTALTALIYGRLLMVTNAGDCRAVLCHKGEAIDMSQDHRPIYPSERRRVEELGGYIDDGYLNGVLSVSRALGDWDMKLPQGSPSPLIAEPEFRQVILTEEDEFLIIGCDGIWDVMSSQHAVSLVRRSLRRHDDPEKCARDLVMEALRLNAFDNLTVIVVCFTCPDPRELSPPHRSGRFSAEAFRSLRTLLEGSASK 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3538 393 ProSitePatterns PPM-type phosphatase domain signature. 127 135 IPR000222 GO:0043169
Dere01g3538 393 Pfam Protein phosphatase 2C 98 350 IPR001932 -
Dere01g3538 393 SMART PP2C_SIG_2 103 358 IPR001932 -
Dere01g3538 393 SMART PP2C_4 78 356 IPR001932 -
Dere01g3538 393 SUPERFAMILY PP2C-like 82 358 IPR036457 -
Dere01g3538 393 PANTHER PROTEIN PHOSPHATASE 2C 73 356 IPR015655 GO:0004722|GO:0006470
Dere01g3538 393 Gene3D - 79 361 IPR036457 -
Dere01g3538 393 CDD PP2Cc 87 358 IPR001932 -
Dere01g3538 393 ProSiteProfiles PPM-type phosphatase domain profile. 88 358 IPR001932 -
Dere01g3538 393 FunFam Probable protein phosphatase 2C 22 73 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3538 Dere-ChrDere01 49724821 49727200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3538 101 389 PP2C-type Phosphatase Gene Family AT3G62260 67.687 9.92e-144 408
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Dere01g3538 PP2C 1.5e-65 CL0238