Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3534 ATGGCATCAGCGGGTGTAGCACCTGCTTCTGGATTGAGAGATCCAAATGCAAATACAGTTGGCGTTGAGAAGTTGCCTGATGAGATGAATGACATGAAAATTAGGGATGACAAGGAAATGGAAGCAACTGTGGTAGATGGAAATGGGACTGAAACAGGACATATAATTGTGACTACCATTGGTGGTAAAAACGGCCAGCCAAAGCAGACTATAAGCTACATGGCTGAGCGTGTTGTTGGGCAAGGTTCTTTTGGTGTAGTTTTCCAGGCAAAGTGCTTGGAGACAGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAAGACAAGAGGTACAAGAACCGGGAATTGCAAACTATGCGTCTTCTTGACCACCCTAATGTTGTATCTTTGAAGCATTGCTTCTTTTCAACAACCGAAAAAGATGAGCTTTATCTTAACTTGGTACTTGAGTATGTTCCTGAGACTGTCCATCGGGTGATCAGACACTATAACAAAATGAATCAAAGGATGCCGTTGATATATGTGAAATTGTATTTCTACCAAATATTGAGAGCACTTGCTTACATTCACAACAGCATTGGTGTGTGTCACAGAGACATAAAACCTCAAAATTTACTGGTCAACCCTCACACCCACCAGCTTAAGCTATGTGACTTTGGAAGTGCTAAAGTTTTGGTAAAAGGGGAACCAAACATATCTTACATCTGTTCTAGGTACTATAGAGCTCCTGAGCTTATATTTGGTGCGACTGAGTATAGCACAGCCATTGACATATGGTCTGCTGGTTGTGTACTTGGTGAACTATTGCTTGGGCAGCCTCTCTTTCCTGGTGAGAGTGGAGTGGACCAGCTTGTTGAAATTATCAAGGTTTTGGGTACCCCAACAAGAGAAGAAATTAAATGCATGAATCCTAATTACACAGAGTTTAAATTTCCCCAAATTAAAGCCCATCCATGGCACAAGATCTTTCACAAGCGCATGCCTCCTGAAGCCGTGGACCTTGTCTCAAGACTACTGCAATACTCTCCAAATCTTCGAAGCACAGCTTTGGAGGCCCTTGCTCATCCATTCTTTGATGAGCTACGCGACCCAAATACCCGCTTGCCAAATGGGCGCTTCCTTCCTCCACTATTTAACTTCAAATCCAATGAGCTTAAGGGAGTACCTGCAGAGATGCTGGTGAAGATAATTCCACCAAATGCGAGAAAGCCGTGTGCTTTGTTTGGATCATCATGA 1233 0.4307 MASAGVAPASGLRDPNANTVGVEKLPDEMNDMKIRDDKEMEATVVDGNGTETGHIIVTTIGGKNGQPKQTISYMAERVVGQGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVSLKHCFFSTTEKDELYLNLVLEYVPETVHRVIRHYNKMNQRMPLIYVKLYFYQILRALAYIHNSIGVCHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYSTAIDIWSAGCVLGELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRSTALEALAHPFFDELRDPNTRLPNGRFLPPLFNFKSNELKGVPAEMLVKIIPPNARKPCALFGSS 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3534 410 Gene3D Transferase(Phosphotransferase) domain 1 153 400 - -
Dere01g3534 410 SMART serkin_6 73 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g3534 410 FunFam Shaggy-related protein kinase kappa 153 401 - -
Dere01g3534 410 Gene3D Phosphorylase Kinase; domain 1 57 152 - -
Dere01g3534 410 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 37 402 - -
Dere01g3534 410 CDD STKc_GSK3 68 360 IPR039192 -
Dere01g3534 410 ProSiteProfiles Protein kinase domain profile. 73 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g3534 410 Pfam Protein kinase domain 73 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g3534 410 ProSitePatterns Protein kinases ATP-binding region signature. 79 103 IPR017441 GO:0005524
Dere01g3534 410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Dere01g3534 410 MobiDBLite consensus disorder prediction 1 22 - -
Dere01g3534 410 FunFam Glycogen synthase kinase-3 beta 57 152 - -
Dere01g3534 410 SUPERFAMILY Protein kinase-like (PK-like) 72 382 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3534 Dere-ChrDere01 49709224 49712191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3534 73 366 MAP Kinase Gene Family AT1G73670 38.978 1.21e-56 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Dere01g3534 Pkinase 1.6e-65 CL0016