Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3523 ATGGAGCACAGGGGTGTTCCCATGATGAGAAGTTTATCAGACTGTGGGTCATCGGCAACGGATGGTAGTGAAGAAGAGACAGTAAACATAAAGAAAGGTGCATGGACAGAGGAAGAGGATTCTATTCTGATCAACTACATCACCCTCCACGGCGAGGGTCTAAAGCGAACGGGCAAAAGCTGCAGATTAAGATGGTTGAACTACTTGCGTCCGAATGTTCGACGAGGGAATATCACCCTCCAAGAACAGCTCATGATTCTCGACCTCCATCTCCGCTGGGGCAATCGGTGGTCGAAAATAGCGCAAAACTTGCCAGGAAGAACAGACAATGAGATAAAAAACTATTGGAGGACGAGAGTGTTGAAGCAGGCTAAGCTATTGAAGTGTGATGTGAATAGCAAAGAGTTCAGAGACGCGCTACGTTTGGTATGGATGCCTCGCCTACAGGAGCGAATCCGGGCCTCATCATCCGGGTCTATGTCTGTCCATAACCAAGCCGAATCCAATAGCTATCCTTGTTTCATGCAGGTGCCTTCGCCTCACTGTGCACTGCTTGATGTCCAAACCTCATCTCTCTCTGACTCTAGCGAGTGTTACAATTTTACGAGGGGTGGTATCTGCTGTGACGGTGCAATAGAAAAAGGAGGAGTGGAGTCTTGGGGGATACAAGCGTCTGAGGCTGGCAATGGTTTTGGGGTTGCAGACTTTTGGACAGAGGAAAACATATGGTTCTTGCAGCAACAGCTATCTGATGAGATTTGA 762 0.4816 MEHRGVPMMRSLSDCGSSATDGSEEETVNIKKGAWTEEEDSILINYITLHGEGLKRTGKSCRLRWLNYLRPNVRRGNITLQEQLMILDLHLRWGNRWSKIAQNLPGRTDNEIKNYWRTRVLKQAKLLKCDVNSKEFRDALRLVWMPRLQERIRASSSGSMSVHNQAESNSYPCFMQVPSPHCALLDVQTSSLSDSSECYNFTRGGICCDGAIEKGGVESWGIQASEAGNGFGVADFWTEENIWFLQQQLSDEI 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3523 253 Gene3D - 29 75 - -
Dere01g3523 253 Gene3D - 79 120 - -
Dere01g3523 253 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 29 184 IPR044676 GO:0003700|GO:0006355|GO:0043565
Dere01g3523 253 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 124 IPR017930 -
Dere01g3523 253 SUPERFAMILY Homeodomain-like 29 116 IPR009057 -
Dere01g3523 253 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 27 69 IPR017930 -
Dere01g3523 253 ProSiteProfiles Myb-like domain profile. 27 120 IPR001005 -
Dere01g3523 253 SMART sant 31 71 IPR001005 -
Dere01g3523 253 SMART sant 74 122 IPR001005 -
Dere01g3523 253 MobiDBLite consensus disorder prediction 1 28 - -
Dere01g3523 253 Pfam Myb-like DNA-binding domain 32 69 IPR001005 -
Dere01g3523 253 Pfam Myb-like DNA-binding domain 75 118 IPR001005 -
Dere01g3523 253 CDD SANT 79 118 IPR001005 -
Dere01g3523 253 FunFam MYB transcription factor 79 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3523 Dere-ChrDere01 49611269 49612304 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3523 23 249 MYB Transcription Factor Family AT2G47190 48.221 4.52e-73 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere01g3523 Myb_DNA-binding 5.4e-12 CL0123