Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3506 ATGGAGAAGAAGGAGATGGGTGTGAAGACCGAGGATGCAACTGGATCCTCTTCAATGTCGGGTTACAACGGTTATCCATTTTCGAACGCTTTTGAATTTTGTGAAGCGGAAAAGAGCTCTCTAGGGTTTATGGAGTTACTGGGTGTCCAAGACTACAGTCCTCTGCTTGATTTGCCGCTGCCGCAGCAAGTGTCGACAATCGATCCCTCTGCTATCAAAGATCTATCTGACACTGCCAAAGAGTGTTCAGAGGTCTTGAATCAACAACCTGCGACCCCTAACTCTTCATCGATCTCGTCGGCGTCCAGTGAGGCCGTGACTGTCAATGACGAACACAATAAAAGTGTAGACCAAGCTGAAGAACTCTCCAAGACCAAGAAACAATTGAAAGCCAAGAAGACAAATCAAAAGAGACAGAGAGAGCCGAGATTCGCGTTCATGACGAAAAGCGAGGTGGATCATCTGGAAGATGGGTACAGATGGAGAAAGTACGGTCAAAAAGCTGTGAAAAACAGCCCCTTTCCCAGGAGCTATTATCGTTGCACCAGCGCTTCATGTAATGTGAAGAAACGAGTGGAGCGATCTTTCAGCGATCCAAGCATTGTTGTGACAACCTATGAAGGCCAACACACACATCCAAGCCCAGTTATGCCTCGCTCAAGCCTCGTCGGAGTCGGAGCTTCACTACCGGCAGGTGTCTCCGCCGGATGTGCTACCTCCTTGAATTCGCTAATGGCAGGAAATCTTCTATCCCAGTATCATCACCCTCAACAACAACTTCTTAATAAGAATACATTATCGTCTATGGGCTTTCCTAGCAATAGCAATATTGATTTGACTTCAAAGAACGCTGCATTTGCCTTTTCTCAAGACAGAAGGCTTTGTAACTCAGGAGCCACTGCTGCTTTTCTAAGGGACCATGGGCTTCTTCAAGATATTCTTCCTTCGCATATATTGAAAGAAGAGTAA 969 0.4623 MEKKEMGVKTEDATGSSSMSGYNGYPFSNAFEFCEAEKSSLGFMELLGVQDYSPLLDLPLPQQVSTIDPSAIKDLSDTAKECSEVLNQQPATPNSSSISSASSEAVTVNDEHNKSVDQAEELSKTKKQLKAKKTNQKRQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTSASCNVKKRVERSFSDPSIVVTTYEGQHTHPSPVMPRSSLVGVGASLPAGVSAGCATSLNSLMAGNLLSQYHHPQQQLLNKNTLSSMGFPSNSNIDLTSKNAAFAFSQDRRLCNSGATAAFLRDHGLLQDILPSHILKEE 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3506 322 PIRSF WRKY_txn_fact_IIc 1 322 IPR017396 GO:0003700
Dere01g3506 322 Gene3D WRKY domain 140 216 IPR036576 GO:0003700|GO:0006355|GO:0043565
Dere01g3506 322 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 87 254 IPR044810 GO:0003700
Dere01g3506 322 Pfam WRKY DNA -binding domain 156 213 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dere01g3506 322 Coils Coil 112 139 - -
Dere01g3506 322 ProSiteProfiles WRKY domain profile. 150 215 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dere01g3506 322 SMART WRKY_cls 155 214 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dere01g3506 322 MobiDBLite consensus disorder prediction 84 109 - -
Dere01g3506 322 FunFam WRKY transcription factor 57 141 215 - -
Dere01g3506 322 MobiDBLite consensus disorder prediction 1 21 - -
Dere01g3506 322 MobiDBLite consensus disorder prediction 110 128 - -
Dere01g3506 322 MobiDBLite consensus disorder prediction 84 142 - -
Dere01g3506 322 SUPERFAMILY WRKY DNA-binding domain 147 215 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3506 Dere-ChrDere01 49497143 49498617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3506 32 322 WRKY Transcription Factor Family AT2G47260 48.910 2.31e-68 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Dere01g3506 WRKY 9.1e-27 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3506 01 49497143 49498617 Dere02g0451 02 4511073 4512385 CCT
Dere01g3506 01 49497143 49498617 Dere01g3506 01 49497143 49498617 ECH