Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3504 ATGGGAGTTTCTTCACAGCCTTTCAATGTTTCCCTTTCTTTGAAAGATATGCTTCAGGGAACTGAAGAAAACAAGAATTCATCGTATGGGTATTTGTGGAGGAAAGTGATGGCATCTCCGAAGGTGAGCAAGAAAAGTGTCAAAAGCAGAAGGCAAGGAAGGATTCTAATGAAGAGGAGGGCACGCTTGATGGAAGGTTCAAGAAGACGAGCCATCAAGATAGAGAGAAAGGTGAGGACATTGAAGAAGCTCATACCCAACGGTGACTCCATGGGGTTGGATGGACTCTTCAGACAGACGGCTGATTACATTTTGTCCTTACAAATGAGAGTGAGAGTCATGCAGATTATGGTTAAGGAATTGACGGGATCTGATGAGTGA 381 0.4383 MGVSSQPFNVSLSLKDMLQGTEENKNSSYGYLWRKVMASPKVSKKSVKSRRQGRILMKRRARLMEGSRRRAIKIERKVRTLKKLIPNGDSMGLDGLFRQTADYILSLQMRVRVMQIMVKELTGSDE 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3504 126 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 58 107 IPR011598 GO:0046983
Dere01g3504 126 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 33 119 IPR044660 GO:0006355
Dere01g3504 126 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 59 121 IPR036638 GO:0046983
Dere01g3504 126 CDD bHLH_AtIBH1_like 65 118 IPR044549 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3504 Dere-ChrDere01 49488733 49489113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3504 56 125 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G47270 56.338 4.09e-20 77.4