Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3502 ATGCAAAACACTCAGTGGATTCACATCCAGATTTCCTTTGGCGTTTACAGCAACTCCACCGTTATCGAGTGGGATGGCTATATGACACCATTTACTACTCCTACTTTGATTTCAGAAGTAGATAATATTGTCGCTAAAGGCATTACTTTCAAGAATACGTATAACGACCCCGTACTAGATGCAACCGAACACCTCCCAGCAAAAGCTGCCAGAGTAGAAGGTAATAAATGTGCATTTTTTGAATGTGTTTTTCTGGGAGTGCAAGACACCCTTGACGACCGCAGTGGCCGCCATTACTTCCAGAAGTGCTACATCCAAGGTGGAATTGATTTCATATATGGGGATGGCCAGTCTATCTATGAGAGAGAACCTGATGTATGTGGAGGAGGGATGCTGGGGCCAAGGGCAGACATGTCGAAGAGAGTGCCATGGATGAAACATCCGAGTGGAAGGGCTTTTGATTACTTCCTGAATATGGCCTTCATGGATCATAAAGGATGGATTGGCAAACTTCCAATAACGTCTTCCTAG 531 0.4463 MQNTQWIHIQISFGVYSNSTVIEWDGYMTPFTTPTLISEVDNIVAKGITFKNTYNDPVLDATEHLPAKAARVEGNKCAFFECVFLGVQDTLDDRSGRHYFQKCYIQGGIDFIYGDGQSIYEREPDVCGGGMLGPRADMSKRVPWMKHPSGRAFDYFLNMAFMDHKGWIGKLPITSS 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3502 176 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 16 122 - -
Dere01g3502 176 Gene3D - 1 123 IPR012334 -
Dere01g3502 176 SUPERFAMILY Pectin lyase-like 3 169 IPR011050 -
Dere01g3502 176 Pfam Pectinesterase 27 120 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3502 Dere-ChrDere01 49457542 49458925 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3502 1 121 Carbohydrate Esterase AT2G19150 40.000 4.98e-24 93.6