Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3501 ATGTCGAAGCGGAAGTTTGGATTCGAAGGCTTTGGCATAAACCGCCAATCGACCTATAATTTTGAGCGATCTCAAGCTCCTCAGCGACTGTATGTTCCTCCTTCATCGCGTCATGGGCATGACAATTACGAGGACACTGACCTTGACAACATTGATTATGATGATAATGATGCTGCCAAGGACGGGAACAATAACAATGGCAGCAAGAACGATGGTGCCAACGACGATATTGACCCCCTAGATGCGTTTATGGAAGGGATTCACGAGGAAATGAGAGCCGCGCCCCCTCCGCTGCCGAAAGAGAAGGCAGAGGACAGGTACAGAGATGATGATGAGGACGACCCGATGGAGAGTTTCTTGAGGGCGAAGAAGGACGTAGGGTTGACCCTGGCGTCTGAGGCTCTGCAGGCTGGATATGATTCCGACGAAGAGGTTTATGCAGCTGCGAAGGCTGTAGACGCGGGAATGATCGAGTATGATTCTGACGACAATCCCATTCTTGTCGACAAGAAGAAAATTGAGCCCATACCTGCTCTGGACCACAGTTCCATTGAGTACGAGCCCTTTAACAAGGATTTTTACGAGGAAAAGCCATCAATATCAGGTATGAGTGAGCAAGATGTTGCTGAATACAGGAAGAGTTTGGCCATTCGAATATCTGGCTTTGACGTTCCGAAGCCAATTAAGACATTTGAAGACTGTGGTTTCTCTCCACAGCTTATGAATGCCATAAAGAAGCAAGGCTATGAGAAGCCAACATCAATACAATGTCAAGCTCTACCAGTTGTGCTCTCTGGCCGAGATATAATTGGTATAGCGAAAACTGGTTCTGGTAAAACTGCTGCTTTTGTGCTTCCTATGATTGTGCATATCATGGATCAGCCTGAACTTCAGAAGGAAGAAGGTCCAATAGGAGTAATATGTGCTCCCACCAGAGAACTTGCACATCAGATATATCTGGAGTCCAAGAAATTTGCAAAACCTTATGGGATACGTGTCTCTGCTGTCTATGGTGGAATGTCAAAACTTGATCAGTTCAAAGAACTTAAGGCAGGCTGTGAGATAGTTGTTGCTACCCCTGGCAGATTGATAGACATGCTGAAAATGAAGGCACTTACAATGATGAGAGCAACTTACTTGGTACTTGATGAGGCTGATCGGATGTTTGACCTTGGATTTGAACCACAAGTAAGGTCCATTGTTGGTCAAATCAGGCCTGACCGTCAAACTTTACTTTTTTCTGCAACAATGCCTCGTAAGGTTGAGAAGTTGGCCAGGGAAATTCTTACTGATCCTGTTAGAGTGACAGTTGGGGAGGTTGGAATGGCAAATGAAGACATTACTCAAGTTGTTGAAGTAATTTCTTCTGATTTAGAGAAATTGCCGTGGCTTCTTGAGAAGCTGCCTGGAATGATTGATGAAGGTGATGTCTTAGTATTTGCTTCAAAAAAGGCTACTGTGGATGAAATTGAATCACAACTAGCTCAAAGAAGCTTTAAAGTGGCAGCTCTACATGGTGATAAAGATCAAGCTTCTCGTATGGATATCTTGCAGAAGTTTAAATCTGGTGCCTACCATGTTCTTATTGCAACTGATGTCGCTGCTCGTGGTCTTGACATCAAGTCAATTAAGTCAGTGGTAAATTTTGATATTGCAAAAGATATGGATATGCATGTACATCGTATTGGTAGAACTGGTCGTGCTGGAGACAAAGATGGGGTTGCATACACTCTTATAACTCAGAAAGAAGCACGGTTTGCTGGTGAACTGGTTAATAGCTTAATAGCAGCTGGTCAAAATGTGTCCATGGAGTTGATGGATCTTGCTATGAAGGATGGGAGATTCAGGTCCAAACGTGATGCAAGAAAAGGAGGTGGGAGAAAAGGGAGAGGGAGAGGAGGAAGTGCAGGTAGAGGTGTGCGTGGAGTGGATTATGGCATGGGTATTGGATATACTCCAGAGTCCAATAACCCTTCACCTAACACTGTTCCAAGTCGATCTGCCACTGTAAACTCACTGCGGACAGGAATGATGGCGCAATTTAGGAGTAACTTTGTTGCGGCTTCATCAAATACTCAAAATCAATCCTTCAGTAACAGTACAAGCATGCCTTCTTATAAGAGACCCACCCTCCCTGGCTTCGTATCTGGTGGGTCAATTGGTGGGGATATAAACACTAATCAGACTCCTGCTTCATCTAGTCCTGCCATTAGTCAGAACTCTGGAGTTGACGCTGGTCAGAGGAACACGAACAGCTCCAAGCCTAGAGAAAGGAGGAGGCCTTCAGGCTGGGATAGGTAG 2301 0.4494 MSKRKFGFEGFGINRQSTYNFERSQAPQRLYVPPSSRHGHDNYEDTDLDNIDYDDNDAAKDGNNNNGSKNDGANDDIDPLDAFMEGIHEEMRAAPPPLPKEKAEDRYRDDDEDDPMESFLRAKKDVGLTLASEALQAGYDSDEEVYAAAKAVDAGMIEYDSDDNPILVDKKKIEPIPALDHSSIEYEPFNKDFYEEKPSISGMSEQDVAEYRKSLAIRISGFDVPKPIKTFEDCGFSPQLMNAIKKQGYEKPTSIQCQALPVVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLESKKFAKPYGIRVSAVYGGMSKLDQFKELKAGCEIVVATPGRLIDMLKMKALTMMRATYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPRKVEKLAREILTDPVRVTVGEVGMANEDITQVVEVISSDLEKLPWLLEKLPGMIDEGDVLVFASKKATVDEIESQLAQRSFKVAALHGDKDQASRMDILQKFKSGAYHVLIATDVAARGLDIKSIKSVVNFDIAKDMDMHVHRIGRTGRAGDKDGVAYTLITQKEARFAGELVNSLIAAGQNVSMELMDLAMKDGRFRSKRDARKGGGRKGRGRGGSAGRGVRGVDYGMGIGYTPESNNPSPNTVPSRSATVNSLRTGMMAQFRSNFVAASSNTQNQSFSNSTSMPSYKRPTLPGFVSGGSIGGDINTNQTPASSSPAISQNSGVDAGQRNTNSSKPRERRRPSGWDR 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3501 766 MobiDBLite consensus disorder prediction 616 642 - -
Dere01g3501 766 FunFam probable ATP-dependent RNA helicase DDX17 191 438 - -
Dere01g3501 766 MobiDBLite consensus disorder prediction 690 766 - -
Dere01g3501 766 MobiDBLite consensus disorder prediction 690 707 - -
Dere01g3501 766 MobiDBLite consensus disorder prediction 1 113 - -
Dere01g3501 766 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 229 257 IPR014014 GO:0003724
Dere01g3501 766 MobiDBLite consensus disorder prediction 751 766 - -
Dere01g3501 766 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 212 438 IPR027417 -
Dere01g3501 766 MobiDBLite consensus disorder prediction 720 750 - -
Dere01g3501 766 CDD DEADc_DDX42 240 436 - -
Dere01g3501 766 MobiDBLite consensus disorder prediction 13 31 - -
Dere01g3501 766 Pfam Helicase conserved C-terminal domain 473 569 IPR001650 -
Dere01g3501 766 Gene3D - 191 435 IPR027417 -
Dere01g3501 766 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 260 435 IPR014001 -
Dere01g3501 766 MobiDBLite consensus disorder prediction 81 113 - -
Dere01g3501 766 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 460 609 IPR001650 -
Dere01g3501 766 Pfam DEAD/DEAH box helicase 253 424 IPR011545 GO:0003676|GO:0005524
Dere01g3501 766 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 196 609 - -
Dere01g3501 766 CDD SF2_C_DEAD 447 579 - -
Dere01g3501 766 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 376 607 IPR027417 -
Dere01g3501 766 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 381 389 IPR000629 -
Dere01g3501 766 SMART helicmild6 488 569 IPR001650 -
Dere01g3501 766 Gene3D - 436 613 IPR027417 -
Dere01g3501 766 SMART ultradead3 248 450 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3501 Dere-ChrDere01 49446144 49451249 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3501 229 585 Eukaryotic Initiation Factors Gene Family AT3G13920 35.278 1.65e-62 214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3501 01 49446144 49451249 Dere01g3501 01 49446144 49451249 ECH