Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3500 ATGCCCTTTTACATTGCAATGGTGGAGAAGCGTTACTTGGAGGCAATTGGCTCGGTCAATGGGCTAGAGAATGGAGCAGTGAATTGGCGAGAAGAAATTTTCGCTCCAAATGGTGCATTTTGCGAACCTCAGAGACTTGGAGCATTGCCAAGCATCGAATCGAGCAGACAATGGCGATCATTTATAGGAGCGGATCTGAACAAGTTGTCAAGCAACAGACCCAAAATTGGTGAAGTGGTACAGTCTTTTAAAATGGTGCAACATATCACAGCATCACAGAATATCATGATTCCACGTCAGCCTCCTGCTATGCACAATCGTCTACCACATATGAGAAACAGCCACTATTTTCAGCAAAACTGTGCACATCCACCTCCTCGTATAAAAGTCACGGGGAGCAGCCCTGATTGGGTACTCACACTCAGGCTTTCCACCTTTGTCTCTGCTCTTAAAGCCCACAAGCCAATAAAAGAGATAGAGACAATGGAGTTCAATAAAAGCCTTGTCCTCATGGTTTCCCTCTCTTGCTTGCTCCTATCGGGCATTAATGCCGTTCCCACAACTCGCACCCAATTGTTGGAAGAAGGGGCTCCGGCTGCCGCCCCAGCCTCGCAATACAGCGCCGATCTGGTGGCTCTGTGCCAAGACGCGGAGAACGCAGATCTGTGCATGCGAACCATAGCCCCAGCCATCAATGGCGCTCTTGACCCCGTGGTGGCTCTTCGGGCCGAAATTAGGGTAACCCTGAACCTCACAAACAAGATCGCTGAAATAATCAAGAAATTGCGGGACGACCCCTCAATTTCTAAAGACGAAAGTTCCTCACTGGAGATATGTGACGACCAGTACTCTTCCATCGTTGACACCATTAGCGAAACTCTGGATAGCATTCAGCAGAACGACGTGTACAGTGCTTGGACCAAGTTTTCGTCAGTGATTTCGTTCCAACAGACATGTGAGGATACTTTCAAGGAGGGAACCACACCCATCCCCTTCGCTGAGGATTCCCAGACTCTGTTCCAGCTGGGCGGCAATTGCTTGGCCATCCTCCAGCGTTTATCCGGGGAAACTCCCCTTTTTTAA 1083 0.4912 MPFYIAMVEKRYLEAIGSVNGLENGAVNWREEIFAPNGAFCEPQRLGALPSIESSRQWRSFIGADLNKLSSNRPKIGEVVQSFKMVQHITASQNIMIPRQPPAMHNRLPHMRNSHYFQQNCAHPPPRIKVTGSSPDWVLTLRLSTFVSALKAHKPIKEIETMEFNKSLVLMVSLSCLLLSGINAVPTTRTQLLEEGAPAAAPASQYSADLVALCQDAENADLCMRTIAPAINGALDPVVALRAEIRVTLNLTNKIAEIIKKLRDDPSISKDESSSLEICDDQYSSIVDTISETLDSIQQNDVYSAWTKFSSVISFQQTCEDTFKEGTTPIPFAEDSQTLFQLGGNCLAILQRLSGETPLF 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3500 360 Pfam Plant invertase/pectin methylesterase inhibitor 212 349 IPR006501 GO:0004857
Dere01g3500 360 CDD PMEI-like_2 207 349 - -
Dere01g3500 360 Gene3D Invertase/pectin methylesterase inhibitor family protein 210 356 IPR035513 -
Dere01g3500 360 NCBIfam pectinesterase inhibitor domain 205 353 IPR006501 GO:0004857
Dere01g3500 360 PANTHER PECTINESTERASE INHIBITOR-LIKE 161 354 - -
Dere01g3500 360 SMART PMEI_2 205 349 IPR006501 GO:0004857
Dere01g3500 360 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 212 353 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3500 Dere-ChrDere01 49429191 49431274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3500 170 354 Carbohydrate Esterase AT5G49180 22.613 5.55e-06 46.2