Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3496 ATGGATGGCACTGCCTCCCCAAAACTTGAGTCAGAAGCATCTCCAGAGCTCAAACCAGAAGAAGCTCAAGCACTCAAAAAAAGAAAAACGGTTGAGAAAACAGTTGTGACAGTGAGAATAGGAGAAAATGTTAGCAAACTGAAGAATGAAGGGCTACCTTCTGATTTCTGGTCTTGGAGAAAATATGGACAAAAGCCTATCAAAGGATCTCCTTATCCAAGGGGCTATTACAGGTGCAGCACATCCAAGGGTTGTTCAGCCAAAAAACAAGTAGAGAGGTGCAGAACAGATGCTTCAATGCTCATCATTACTTATACATCTACTCATAACCATCCAGCTCCTGATCCTCCCTCCACCCCGAATCAAACCCAACCGAAAGAATCCCAAAGTCAAACTGCTGAAGATCTTCCAGCGACCTCGAAAGTGGAAGACCAAGAAGAAAAAGAAGGGAAAACGAATCATGAGCCGACTACGGCCAGTGATCAATGTGCAGAAGAAGAAAATTTTTATTACTTGCGATCGCCCTTACAATGCTCTGAGGATATCAGTGCCGACCCAGAAGATCCTTTCGAATTGAACCCAGAGAAAACTCATCGGAGAATAGATCATCTCCTAGAGAAAGAGCCCCTCTGTTATTCCCAGTTCAATAACCTGTCAACACCCAAATCAGAAGAACATGACTATTTTGATGAGCTTGAAGAGCTACCCATGTCTTTACCTTTCTTAAACTTGATGAAAAGCAATTTTTCCGAGGAAAGGATTGCGATAGCCCCATCCTGA 780 0.4321 MDGTASPKLESEASPELKPEEAQALKKRKTVEKTVVTVRIGENVSKLKNEGLPSDFWSWRKYGQKPIKGSPYPRGYYRCSTSKGCSAKKQVERCRTDASMLIITYTSTHNHPAPDPPSTPNQTQPKESQSQTAEDLPATSKVEDQEEKEGKTNHEPTTASDQCAEEENFYYLRSPLQCSEDISADPEDPFELNPEKTHRRIDHLLEKEPLCYSQFNNLSTPKSEEHDYFDELEELPMSLPFLNLMKSNFSEERIAIAPS 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3496 259 SUPERFAMILY WRKY DNA-binding domain 50 114 IPR036576 GO:0003700|GO:0006355|GO:0043565
Dere01g3496 259 FunFam WRKY transcription factor 65 36 114 - -
Dere01g3496 259 MobiDBLite consensus disorder prediction 103 166 - -
Dere01g3496 259 Gene3D WRKY domain 39 115 IPR036576 GO:0003700|GO:0006355|GO:0043565
Dere01g3496 259 ProSiteProfiles WRKY domain profile. 48 114 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dere01g3496 259 MobiDBLite consensus disorder prediction 122 138 - -
Dere01g3496 259 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 16 241 IPR044810 GO:0003700
Dere01g3496 259 MobiDBLite consensus disorder prediction 13 30 - -
Dere01g3496 259 Pfam WRKY DNA -binding domain 55 112 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dere01g3496 259 SMART WRKY_cls 53 113 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dere01g3496 259 MobiDBLite consensus disorder prediction 1 30 - -
Dere01g3496 259 MobiDBLite consensus disorder prediction 139 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3496 Dere-ChrDere01 49390247 49391425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3496 24 114 WRKY Transcription Factor Family AT2G34830 65.217 1.23e-36 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Dere01g3496 WRKY 2e-24 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3496 01 49390247 49391425 Dere01g3496 01 49390247 49391425 ECH