Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3489 ATGGCTTCGAATCTCCGTCCAGCAAGTTCGGGATCCGATGCGGGAGACCCGAGATCTGATGTTATGGATGATAGGAAGAGGAAGAGGATGCTGTCTAACCGTGAATCGGCGAGGCGATCACGGATGAAGAAGCAGAAGCAACTGGAAGATCTGACCAATGAAGTCAGCCGATTGCAGGGTGCAAACAGTCAGCTAGTTCAGAGCATAAAAGAGAAGGAGGAGGCATACATTGAGATGGAGTCCGCCAACAGTATCCTGAGGGCTCAGACTATGGAGTTGTTCGATCGATTGCGCTTTCTGAACTCGATACTTGAGATCGCTGAAGAGGTCAGCGGGCTCTCTGTTGAGATCCCTGAGATACCAGATCCTCTCCTAAAGCCATGGCAGCTTTCTTATCCAATACAGCCGATCACGGCGTCCGCAGACTTCGTCCTGCATTGA 441 0.5102 MASNLRPASSGSDAGDPRSDVMDDRKRKRMLSNRESARRSRMKKQKQLEDLTNEVSRLQGANSQLVQSIKEKEEAYIEMESANSILRAQTMELFDRLRFLNSILEIAEEVSGLSVEIPEIPDPLLKPWQLSYPIQPITASADFVLH 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3489 146 CDD bZIP_plant_GBF1 26 76 IPR045314 GO:0003700|GO:0006355
Dere01g3489 146 MobiDBLite consensus disorder prediction 1 53 - -
Dere01g3489 146 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 28 43 IPR004827 GO:0003700|GO:0006355
Dere01g3489 146 PANTHER BZIP TRANSCRIPTION FACTOR 44 9 108 - -
Dere01g3489 146 SMART brlzneu 21 85 IPR004827 GO:0003700|GO:0006355
Dere01g3489 146 Coils Coil 34 89 - -
Dere01g3489 146 Gene3D - 24 78 - -
Dere01g3489 146 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 23 86 IPR004827 GO:0003700|GO:0006355
Dere01g3489 146 FunFam BZIP transcription factor 23 74 - -
Dere01g3489 146 SUPERFAMILY Leucine zipper domain 25 79 IPR046347 GO:0003700|GO:0006355
Dere01g3489 146 MobiDBLite consensus disorder prediction 17 51 - -
Dere01g3489 146 Pfam bZIP transcription factor 24 83 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3489 Dere-ChrDere01 49351784 49352224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3489 15 143 bZIP Transcription Factor Family AT3G62420 59.231 3.75e-51 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Dere01g3489 bZIP_1 6.4e-12 CL0018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3489 01 49351784 49352224 Dere02g0481 02 4740963 4741403 CCT
Dere01g3489 01 49351784 49352224 Dere01g3489 01 49351784 49352224 ECH