Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3486 ATGTGTCAGGTTCCTACTTTGTTGTATTTTTTTGCCATCTGGAAATATCACGAGAAACGCGAGAAAGTCACAATTATCCATAACTTGGTAGAAGATGACACGTATCCTCCGCTCCCGTGCTGCTCCTTTCCCGCCAAAAGTCACAGCATTGTTCATGACTTGGCGCCCAAATCTCCCAAATCTTACCCATTCGTAGTCCAATTTGTCTGTGCCTTTTCGCACAATTTCTGCCTGAGCCTTTCGTTACTGTCTTTGCCGAGTTCAGCCATGAAGGACTTGGACTTCAATGCAGACAAAGCTCTGGCGAAGGAGTTCCTTTCGAACTTCGCTGATGCAAATGGTGAAGCCAAATACATGAACATTTTGCAAGAAGTTGCTAACCACAAAGCTCGAGCTATCCAGATCGATATTGGGGACTTGATTAATTATAAAGATTTAGACGAAGAATTTCTCAGACGTGTGACGGAAAATACTCGGAGGTATATCGGAATTTTCGCTGATGCCATAGACGAACTGATGCCAGAGCCCACAGAAGCCTTTACGGATGATGATCACGACATATTAATGACGCAGAGATCTGACGAAGGAGTGGAAGGTGCTGATGGTTCCGACCCTCTTCAAAAGATGCCTTCTGAGATCAAGCGCTACTTTGAAGTTTATATTAAGGCATCTTCAAAAGGGCGACCATTTACTATTAGGGAGGTTAAGGCTTCATACATTGGTCAGCTTGTAAGGATATCTGGTATCGTGACACGATGTTCGGATGTTAAACCATTGATGCAGGTTGCTGTATACACATGTGAGGATTGTGGTTTCGAAATTTACCAGGAAGTAACAGCTCGAGTCTTCATGCCTTTGTTCGAGTGTCCTTCTAAGCGCTGTCATATGAATCAAAGTAAGGGGAATCTCATCCTTCAACTAAGAGCATCAAAGTTTTTGAAATTTCAAGAGGCAAAAGTTCAAGAATTAGCTGAACATGTCCCAAAAGGTCATATTCCCCGAACAATGACTGTTCATTTTAGGGGAGAGCTTACAAGAAAGGTTGCTCCAGGTGACGTTGTTGAATTATCTGGCATTTTTCTTCCTATACCTTACACTGGTTATAGAGCAATGCGGGCTGGCCTAGTTGCTGATACTTACTTAGAGGCCATGTCTGTGACCCATTTCAAGAAAAGATATGAAGAATATGAATTTTTAGGAGATGATGAAGAGCAAATATTAAAATTGGCTGAAGACGGTGATATCTACAATAAGTTGGCCCGATCATTGGCTCCTGAAATTTTTGGGCATGGAGATATCAAGAAAGCACTGCTTCTTCTACTTGTTGGTGCTCCCCACCGGAAGTTAAAAGATGGGATGAAGATAAGAGGAGATTTACATATATGTCTGATGGGTGATCCTGGTGTTGCAAAGAGTCAGCTCCTTAAACACATAATCAATGTAGCACCAAGAGGGGTGTACACCACTGGCAAAGGAAGTAGTGGTGTAGGTCTAACTGCTGCTGTTCAGAAAGATCCAGTGACAAATGAGATGGTTCTAGAAGGTGGAGCATTGGTGCTAGCAGATATGGGCATTTGTGCCATTGATGAGTTTGACAAGATGGATGAATCGGATCGTACAGCTATACATGAAGTTATGGAACAGCAAACTGTTAGCATTGCCAAGGCCGGGATCACTACATCATTGAATGCAAGGACTGCTGTCCTTGCTGCAGCGAATCCAGCATGGGGAAGATATGATTTAAGAAGAACTCCAGCTGAAAATATTAATCTTCCTCCTGCCCTGCTATCAAGATTTGATCTGCTGTGGTTAATCCTTGATCGAGCTGATATGGATAGTGATCTTGAAATGGCTAGGCATGTTGTCTATGTCCACCAAAATAAAGAATCTCCTGCTCTGGGATTTACTCCTCTTGAACCATCTGTTCTCCGAGCGTATATATCAGCTGCTAGAAGATTATCTCCTAGTGTTCCAAGGGAATTGGAAGAGTATATTGCTAGTGCATACTCGGGCATTCGCCAAGAAGAAGCCAAGTCTAGTACTCCCCATTCCTATACAACTGTCAGAACACTGCTCAGCATTCTCCGCATATCAGCAGCACTAGCAAGACTCCGATTTTCAGAAACTGTTGCTCAGAGTGACGTGGACGAGGCACTGAGGTTAATGCAGATGTCAAAGTTCTCTTTGTACTCTGATGAGCGTCAGAGATCGGGTCTGGATGCCATATCTGATATTTATTCTATACTGCGAGATGAAGCTGCCAGGAGTAACAAGATGGATGTAAGCTATGCCCATGCACTCAATTGGATATCTAGGAAGGGTTACAGCGAAGCACAATTGAAGGAGTGTTTGGAGGAGTATGCAGCATTAAATGTTTGGCAGATACACCCCCACACTTTTGATATACGTTTCATCGATGCTTGA 2424 0.4315 MCQVPTLLYFFAIWKYHEKREKVTIIHNLVEDDTYPPLPCCSFPAKSHSIVHDLAPKSPKSYPFVVQFVCAFSHNFCLSLSLLSLPSSAMKDLDFNADKALAKEFLSNFADANGEAKYMNILQEVANHKARAIQIDIGDLINYKDLDEEFLRRVTENTRRYIGIFADAIDELMPEPTEAFTDDDHDILMTQRSDEGVEGADGSDPLQKMPSEIKRYFEVYIKASSKGRPFTIREVKASYIGQLVRISGIVTRCSDVKPLMQVAVYTCEDCGFEIYQEVTARVFMPLFECPSKRCHMNQSKGNLILQLRASKFLKFQEAKVQELAEHVPKGHIPRTMTVHFRGELTRKVAPGDVVELSGIFLPIPYTGYRAMRAGLVADTYLEAMSVTHFKKRYEEYEFLGDDEEQILKLAEDGDIYNKLARSLAPEIFGHGDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGKGSSGVGLTAAVQKDPVTNEMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLAAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPSVLRAYISAARRLSPSVPRELEEYIASAYSGIRQEEAKSSTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQMSKFSLYSDERQRSGLDAISDIYSILRDEAARSNKMDVSYAHALNWISRKGYSEAQLKECLEEYAALNVWQIHPHTFDIRFIDA 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3486 807 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 425 734 IPR027417 -
Dere01g3486 807 Gene3D - 232 360 IPR012340 -
Dere01g3486 807 Pfam MCM OB domain 232 362 IPR033762 -
Dere01g3486 807 Pfam MCM N-terminal domain 102 222 IPR027925 -
Dere01g3486 807 CDD MCM7 418 725 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Dere01g3486 807 SMART mcm 228 727 IPR031327 GO:0003677|GO:0005524|GO:0032508
Dere01g3486 807 PRINTS Mini-chromosome maintenance (MCM) protein family signature 568 580 IPR001208 GO:0003677|GO:0005524|GO:0032508
Dere01g3486 807 PRINTS Mini-chromosome maintenance (MCM) protein family signature 595 603 IPR001208 GO:0003677|GO:0005524|GO:0032508
Dere01g3486 807 PRINTS Mini-chromosome maintenance (MCM) protein family signature 456 471 IPR001208 GO:0003677|GO:0005524|GO:0032508
Dere01g3486 807 PRINTS Mini-chromosome maintenance (MCM) protein family signature 544 557 IPR001208 GO:0003677|GO:0005524|GO:0032508
Dere01g3486 807 PRINTS Mini-chromosome maintenance (MCM) protein family signature 516 530 IPR001208 GO:0003677|GO:0005524|GO:0032508
Dere01g3486 807 Gene3D - 396 762 IPR027417 -
Dere01g3486 807 ProSitePatterns MCM family signature. 524 532 IPR018525 GO:0003677|GO:0005524|GO:0006260
Dere01g3486 807 Pfam MCM AAA-lid domain 642 725 IPR041562 -
Dere01g3486 807 Gene3D - 259 313 - -
Dere01g3486 807 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 265 276 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Dere01g3486 807 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 247 258 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Dere01g3486 807 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 374 384 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Dere01g3486 807 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 209 221 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Dere01g3486 807 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 282 294 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Dere01g3486 807 ProSiteProfiles MCM family domain profile. 415 621 IPR001208 GO:0003677|GO:0005524|GO:0032508
Dere01g3486 807 FunFam DNA replication licensing factor MCM7 98 189 - -
Dere01g3486 807 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 101 736 IPR031327 GO:0003677|GO:0005524|GO:0032508
Dere01g3486 807 SUPERFAMILY Nucleic acid-binding proteins 102 383 IPR012340 -
Dere01g3486 807 Gene3D - 97 190 - -
Dere01g3486 807 FunFam DNA replication licensing factor MCM7 400 732 - -
Dere01g3486 807 Pfam MCM P-loop domain 402 625 IPR001208 GO:0003677|GO:0005524|GO:0032508
Dere01g3486 807 FunFam DNA replication licensing factor MCM7 259 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3486 Dere-ChrDere01 49312227 49320910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3486 90 805 Core DNA Replication Machinery Family AT4G02060 85.615 0.0 1281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3486 01 49312227 49320910 Dere01g3486 01 49312227 49320910 ECH