Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3483 ATGCAGCAGGTGGACGAGCAGACCAGCGTGCGATTTTACTGTGGCCGATTGAAACTTTTGATTTTGAAACCATGTGCCAATAATCTGACAAATAAGGAAAAAGAAGGCCCCATGAATTTTCGCTTATCAATTGTCTTTCGCCCTTCATCTGCTATCTTCTTCCTCTTGGGCCTTGCTGCACTCATAGTTCTCTTATCAATGACGCCGTGCTGGTATGTTATGCTCAGACGTATCGAGCAGCGCGTGAATTCAAACTCACAAAATTTTCTCTCGGAATTGCAATCTGAAATTGACCGCTCCGCCAAACTGTTACACCCGATGAATTCATCATCAACCAATTTGGCACGACTTCTGAATTCAACCTTCAACAAGACTAATATCTCATTCTGTGACATTAAGACCAAAGTGTCTCCAGTGTTGTTTCAAGCATTTGAGACAATTCCTCACTTAACCGAAATTTCGTACATTGGGATGGAAGGTCTCTTTTTCTTATACTACACAGACCACGATCAAGCTCTTGCAGTGTACTCTAACCCTTCCTTCTGTTCTATCTCGAATGCTTCAGAAATCGAATACTATGTCCAACATGTAAACCGTGACACTGGAGAATTATATGGGGAACCCGTAATTTATGAGCACCCTGTTAATGCAAGTAGGTTTGAGGAAGCAGTTAATAGTTCATATGGATATGCGTCGTTGGGATACAAGTGGGGCGATAGTCATGACCTTTTATATCTAAGTTCGGCAAGAATCTCAAGAACAGGAGTTATCGCGTTAGGATTTCCAGCAACGACAATTACTGATTTTGTCACTCGTATTGGGCGTCATCAAGGTGCTAGCTTTTATTTGGCTACTAAAGATGGAACAGTGCTTCTACAAGGAATCCAACATACCCATATAGTGTTCTCTAACGATATGGCTTACTTCCAATCAGTGAAACCAAATGGTGATCAATTAAGTTATGAGGGCACCATCTCGTGTAAGGATGAAGCCTCTGCGTCTGTTTTGAAAATTGGGGACACTCAGTATTTGACATACTGCTCATCGATTGATATAATGGGACTAGAATTGGTGTACGTTTTGGCCGTCCCGCAAAATGGATTGGTCAACTTTGTACACAAGATTCGGAAACAGGGGTGGGTGCTATTGAGTGCGACGACAGGTATGATATTAGTGTCTATCTTCAGTTTTCTGTTGTTAAGTGCTATAGTAGGTCTGCGAGAGATGCATTTGTGTTCCTCTCTCATCAAACAAATGGAAGCCACTCAGCAAGCAGAGAGGAAGAGTATGAATAAGAGCCTCGCTTTTGCTAGTGCCAGTCATGATGTTCGAGCTTCTCTGGCTGGCATTACTGGTTTGATAGAGATGTCATGTGAAGGAGTTATCCCAGGTTCTGAACTGGAGGCCTATTTAAAACAAATGGATGCTTGTACAAAAGACTTATTAGGACTGTTGAATTCTATTCTTGATACAAGTAAAATTGAGGCAGGGAAAATGCAGCTTGTCGAAGAAGAATTTGATCTATTCCAATTCATAGAAGATGTAGTTGACTTATACCATCCGGTGGCTATGAAGAAGGATGTAGATCTTGTATTGGACCCCTGTGATGGTTCGATTATTAGATATTCGCACGTGAAAGGTGACAGAGGAAAGCTTAAACAAGTTTTGTGTAATTTACTGAGCAATGCTGTCAAATTTACTGATGAGGGACACATAGCAGTTCGAGCTTGGGCTCAAAAGCCAAGTTTCCAGAACTCGATAATAGCCTCTAATAGATGCAGTTTCATGAAGCGTTTATCATGCTTATTTTACAAGAGAAATGAAGCAGATATTTATGTAGAAGCCATGAATCCAATCCAACAAGATCTGAACTGCTTGGAGTTTGTGTTTGAAGTGGATGATACAGGCAGAGGAATTCCTAAAGAGAAGCAAAAGTCAGTGTTTGAGAATTACGTTCAAGTCAAAGAAACTGCTCTAGGACTAGGAGGCACTGGCTTGGGACTTGGTATTGTGCAGTCACTGGTACGTTTGATGCATGGGGATATTGGAATTTTGGACAAGGTAATTGGTGAAAAAGGAACGTGCTTCAGATTCAGTGTCCTCCTCACCGTATGTGAGAAAGTCACGGGGGGTAATAGCACAAGAGAAGGTAATGATTTAGGAGGTGACAGAAATCTCAATCAACTTCAGGGACTAGACATTAACACTCCTAGTTCTGGTTCTAGCATTTGTTCCCCCAGTCCCAGATTACCAATTTTCGCCTCTAGTAGGCCCGGAGCTTCTCGTGTTATTCTTTTGATTCTAAACGAGGAGCGTCGAAGGACTACCCAAAGGTTCATGGAGAGCCTAGGGATTAAAGTTAAGGTTGTGAAGCAGTGGGACCATTTCTCTCATTGTCTCAAGAAGATCAAGCAAATGGGACGCTATTCAAGCCAAAGCTCTACAGGAACATCTGATACGAGTTCTCGGTCAGCGTCTCAAAATTCTAATGCCAGAGCCAAAGGAGTTCCTTTGAGTACAGCAGATGGAACTGACTATATGCCTCCGGTTTTTAAGAAGTCAGAAGATGGAGCTTCCTGGGGTTTCATTCTGCTAGTGATCGATATAATTGCAGGACCTTTATCAGAACTTGGCAGAATGGTATCTGAGTTCAGAAGAGGCCTTGGAAATCCTTGTAAGGTTGTTTGGTTAAATAAGCCCCTTATGCGTGGTGTTAATTTCAAAGCACTCGATGAGGATGTGTTTGATCCTGATGACATTGTCACGTCCAAACCATTTCATGGTACTCGTTTGTTAGAAATTATAAAGCTTCTTCCCGAGTATAGTGGTAATTGGCACAGCGTGTCTGGAAGTGGAAGAGCCAAAAGAGACATATTTCGTGAGAGACTTCGAAGAGATTCCCACTTATTAAAATATCAATCACCTGTGTCAGATAGGGCAGAAGTTTCCTCAACTGATACACCCCCATTTCAAGATGTGGAACGACGAGACTATGGCAGTTCATCAAGAAGTGAACAGCCGTATTCTTATGGCAGGCCCAAAGCAATAAAGTCTCCAGTTGATCATGGAGAAATACAAGAATGTGGTGATTCAAGCGATGACAAACCCTTGGGTGGCAAGAAATTTTTGGTCGCCGAGGACACTGAATATCTACGCATGATAGCTTCTAAGACTCTGATACAGCTGGGTGCGACTACCGTTCAGGAATGCATGAATGGTGAACAAGCTGTGCGACTAGTTGAAGAGGGACTAACTGGGGCTTTTCCCAATCTTCCTTATGATTACATCTTAATGGACTGTGAGATGCCATTAATGGACGGATTTGAGGCAACAAGGCAGATAAGGGAGATGGAGAAGGAGTATGGGGTTCGCATCCCTATCATAGCACTAACAGCTCATACGTCAAGAAAAGAGACAAATATGACCAGAGAGGCTGGAATGGACGTCCATTTAGGCAAGCCACTAAGGAAAGAGCAATTACTGGATGCCATCAGATCCATATACACTTACGGGTGA 3516 0.4246 MQQVDEQTSVRFYCGRLKLLILKPCANNLTNKEKEGPMNFRLSIVFRPSSAIFFLLGLAALIVLLSMTPCWYVMLRRIEQRVNSNSQNFLSELQSEIDRSAKLLHPMNSSSTNLARLLNSTFNKTNISFCDIKTKVSPVLFQAFETIPHLTEISYIGMEGLFFLYYTDHDQALAVYSNPSFCSISNASEIEYYVQHVNRDTGELYGEPVIYEHPVNASRFEEAVNSSYGYASLGYKWGDSHDLLYLSSARISRTGVIALGFPATTITDFVTRIGRHQGASFYLATKDGTVLLQGIQHTHIVFSNDMAYFQSVKPNGDQLSYEGTISCKDEASASVLKIGDTQYLTYCSSIDIMGLELVYVLAVPQNGLVNFVHKIRKQGWVLLSATTGMILVSIFSFLLLSAIVGLREMHLCSSLIKQMEATQQAERKSMNKSLAFASASHDVRASLAGITGLIEMSCEGVIPGSELEAYLKQMDACTKDLLGLLNSILDTSKIEAGKMQLVEEEFDLFQFIEDVVDLYHPVAMKKDVDLVLDPCDGSIIRYSHVKGDRGKLKQVLCNLLSNAVKFTDEGHIAVRAWAQKPSFQNSIIASNRCSFMKRLSCLFYKRNEADIYVEAMNPIQQDLNCLEFVFEVDDTGRGIPKEKQKSVFENYVQVKETALGLGGTGLGLGIVQSLVRLMHGDIGILDKVIGEKGTCFRFSVLLTVCEKVTGGNSTREGNDLGGDRNLNQLQGLDINTPSSGSSICSPSPRLPIFASSRPGASRVILLILNEERRRTTQRFMESLGIKVKVVKQWDHFSHCLKKIKQMGRYSSQSSTGTSDTSSRSASQNSNARAKGVPLSTADGTDYMPPVFKKSEDGASWGFILLVIDIIAGPLSELGRMVSEFRRGLGNPCKVVWLNKPLMRGVNFKALDEDVFDPDDIVTSKPFHGTRLLEIIKLLPEYSGNWHSVSGSGRAKRDIFRERLRRDSHLLKYQSPVSDRAEVSSTDTPPFQDVERRDYGSSSRSEQPYSYGRPKAIKSPVDHGEIQECGDSSDDKPLGGKKFLVAEDTEYLRMIASKTLIQLGATTVQECMNGEQAVRLVEEGLTGAFPNLPYDYILMDCEMPLMDGFEATRQIREMEKEYGVRIPIIALTAHTSRKETNMTREAGMDVHLGKPLRKEQLLDAIRSIYTYG 1171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3483 1171 Pfam His Kinase A (phospho-acceptor) domain 434 497 IPR003661 GO:0000155|GO:0007165
Dere01g3483 1171 PANTHER TWO-COMPONENT HISTIDINE KINASE 64 1165 - -
Dere01g3483 1171 SUPERFAMILY CheY-like 1037 1167 IPR011006 -
Dere01g3483 1171 CDD REC_hyHK_CKI1_RcsC-like 1042 1164 - -
Dere01g3483 1171 Gene3D - 499 709 IPR036890 -
Dere01g3483 1171 SMART REC_2 1040 1164 IPR001789 GO:0000160
Dere01g3483 1171 ProSiteProfiles Histidine kinase domain profile. 438 704 IPR005467 -
Dere01g3483 1171 SMART HisKA_10 431 497 IPR003661 GO:0000155|GO:0007165
Dere01g3483 1171 MobiDBLite consensus disorder prediction 1017 1037 - -
Dere01g3483 1171 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 419 499 IPR036097 GO:0000155|GO:0007165
Dere01g3483 1171 SMART HKATPase_4 547 704 IPR003594 -
Dere01g3483 1171 MobiDBLite consensus disorder prediction 974 1037 - -
Dere01g3483 1171 Gene3D - 414 498 - -
Dere01g3483 1171 ProSiteProfiles Response regulatory domain profile. 1041 1168 IPR001789 GO:0000160
Dere01g3483 1171 PRINTS Bacterial sensor protein C-terminal signature 646 656 IPR004358 GO:0016310|GO:0016772
Dere01g3483 1171 PRINTS Bacterial sensor protein C-terminal signature 662 680 IPR004358 GO:0016310|GO:0016772
Dere01g3483 1171 PRINTS Bacterial sensor protein C-terminal signature 628 642 IPR004358 GO:0016310|GO:0016772
Dere01g3483 1171 CDD HisKA 432 493 IPR003661 GO:0000155|GO:0007165
Dere01g3483 1171 Gene3D - 1021 1168 - -
Dere01g3483 1171 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 486 700 IPR036890 -
Dere01g3483 1171 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 547 702 IPR003594 -
Dere01g3483 1171 Pfam Response regulator receiver domain 1043 1165 IPR001789 GO:0000160
Dere01g3483 1171 MobiDBLite consensus disorder prediction 810 835 - -
Dere01g3483 1171 MobiDBLite consensus disorder prediction 810 840 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3483 Dere-ChrDere01 49286365 49292908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3483 51 1167 Histidine Kinase Gene Family AT2G47430 40.293 0.0 749
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Dere01g3483 HATPase_c 2.9e-23 CL0025