Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3481 ATGGGAGAGGTAGTGCTATTTGTCGATGAATTGGAATATATTTCCAGGATTCCTCGCTGCAGAATATGTCACGAAGAAGAATTTGAGAGCTCGGAAAGCTTCGAAGCTCCTTGTGCTTGTTCTGGGACCGTCAAGTTTGCCCACAGAGATTGCATACAGAGATGGTGCAACGAGAAAGGAAATACAACTTGTGAAATATGTCTCCAGCAATACGAACCTGGATATACAGTGCCTCCTAAGAAATCTCAGATAATTGATGCAGCAATGACCATTAGAGATAGCTTGCAAATTCCAAGGGAGGATGAACCGCTAAACGCAAGATTAGAAGGTATTGCTGAAGAAGTGACAACGGAAAGTAATTACTCTGAATGCACGTCTGCTGCTGACAGAAGCGCATCTTGTTGCCGATCACTGGCTTTCTCTTTTACGCTCGTCTTGCTTGTAAGACATCTTTTCGCATTGCTTACTAGTAGAACGGAAGATTACCCATTTACACTTGTGACTGTCTTTATACTAAAGGCTAGCGGAATTATTATACCCATGTACATAATTATGAGGGCGATAGGGGGCATATATGGAAGTATTCAGCGTCACTATCAGGATTCTGACGACGACACGTCAACGTCTGATAGTGAAGATGAAGAGAATGAACCGGCGCACGATACGATTGTTAGACATTAA 681 0.4273 MGEVVLFVDELEYISRIPRCRICHEEEFESSESFEAPCACSGTVKFAHRDCIQRWCNEKGNTTCEICLQQYEPGYTVPPKKSQIIDAAMTIRDSLQIPREDEPLNARLEGIAEEVTTESNYSECTSAADRSASCCRSLAFSFTLVLLVRHLFALLTSRTEDYPFTLVTVFILKASGIIIPMYIIMRAIGGIYGSIQRHYQDSDDDTSTSDSEDEENEPAHDTIVRH 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3481 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 77 IPR013083 -
Dere01g3481 226 MobiDBLite consensus disorder prediction 199 226 - -
Dere01g3481 226 CDD RING_CH-C4HC3_MARCH 20 67 - -
Dere01g3481 226 SMART ringv_2 19 68 IPR011016 GO:0008270
Dere01g3481 226 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 18 196 IPR033275 -
Dere01g3481 226 Pfam Protein of unknown function (DUF3675) 73 188 IPR022143 -
Dere01g3481 226 FunFam E3 ubiquitin-protein ligase MARCH4 9 77 - -
Dere01g3481 226 ProSiteProfiles Zinc finger RING-CH-type profile. 12 74 IPR011016 GO:0008270
Dere01g3481 226 SUPERFAMILY RING/U-box 18 72 - -
Dere01g3481 226 Pfam RING-variant domain 20 67 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3481 Dere-ChrDere01 49269868 49272295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3481 20 67 C3H Transcription Factor Family AT2G37950 42.857 2.15e-06 45.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3481 01 49269868 49272295 Dere02g0486 02 4778707 4781001 CCT
Dere01g3481 01 49269868 49272295 Dere01g3481 01 49269868 49272295 ECH