Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3471 ATGATTATGTACAAAGCGGCGGCTTCGCGAGTGGATCCCAAGAAATTGACAAGGAAACATATTGCTTCGTATAAAGCAATGTGGTCTTTGATAGCAAGGCACTTGCCAGGAAGAACAGACAATGAGATAAAAAACTATTGGAATTCCCATTTGAGAAGAAAAATTCGCAGCTTCAAGAGGTCTTTGATCAAGGATTTTCCCAAAGTTTGCATTCCGCCCACTCGTAAAGAGGATCTACTCATTGAGCCAGACAGAGAGGATTTGCAGGTACAGTGTCCGGACATGGCTATAGCAAATGAGGATTCTGTTTATGGCCCAAATGAAGGGAAGAAATCTGAAATTCTGAGAGCTTATGAAGAAGGCAATATTGACGGTGGTGAAGGGAGACACATCAGCAATGAAAATGGGGTTACGTGTCCTAATAACAAAATGGCAATGAATGAAGAGCTAGAGAGTGAGGAGTGGTGTCTTTGCTCTTCCGTGGCTTCGGGCTTTGGTGACAACAGTGATTGGGGCACTCTTCTTCAATTCAATTCTGATGGGTCCGACTCACTTGAGGAGAAATAA 567 0.4321 MIMYKAAASRVDPKKLTRKHIASYKAMWSLIARHLPGRTDNEIKNYWNSHLRRKIRSFKRSLIKDFPKVCIPPTRKEDLLIEPDREDLQVQCPDMAIANEDSVYGPNEGKKSEILRAYEEGNIDGGEGRHISNENGVTCPNNKMAMNEELESEEWCLCSSVASGFGDNSDWGTLLQFNSDGSDSLEEK 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3471 188 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 26 55 IPR017930 -
Dere01g3471 188 SMART sant 4 53 IPR001005 -
Dere01g3471 188 CDD SANT 28 51 IPR001005 -
Dere01g3471 188 Pfam Myb-like DNA-binding domain 27 51 IPR001005 -
Dere01g3471 188 Gene3D - 12 67 - -
Dere01g3471 188 ProSiteProfiles Myb-like domain profile. 28 51 IPR001005 -
Dere01g3471 188 SUPERFAMILY Homeodomain-like 21 56 IPR009057 -
Dere01g3471 188 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 28 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3471 Dere-ChrDere01 49189211 49191347 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3471 14 71 MYB Transcription Factor Family AT2G47460 53.333 8.83e-13 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dere01g3471 Myb_DNA-binding 7.4e-07 CL0123