Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3465 ATGTCAACATGCATAGATGTTACAGAAGGGCAACGAGCACCTCTTCTCACTTCCCATAGGAACTCCGCCGATCAAAATGAAGACGCTGTTGTTCCTTTTACATCAGATAAACCAACGTCAACTGTTACTGTTCCAAATCAACGCCTCGCTTCTCTTGATGTCTTCCGTGGCCTAACTGTTGCGTTGATGATTTTAGTTGATGATGCGGGAAAAGCCTTCCCATCCATCAATCATTCTCCATGGTTTGGAGTGACACTTGCGGATTTTGTAATGCCGTTTTTCCTCTTCGGGGTCGGCGTCTCAGTCGGCCTTGTATTCAAGAAAGTCTCTAGCAAACCTAGTGCTACTAAAAAAGTGATACTGAGAACAGTCAAGCTTTTCCTTTTGGGGCTGTTGCTACAAGGTGGGTATTTCCATGGGCGTGGCAGTTTAACTTATGGTGTTGATGTGGCCAAGATACGCTGGCTTGGTATACTTCAGAGGATATCAATTGGATATTTTTTGGTCGCAATATCAGAGATATGGCTAGTAAACAATAACATTTCAGTCAACTCACCAGTTGCGTTTGTGAGAAAATACTTCATCCAGTGGATTTTTTCTATCTCACTGTGCTCTGTTTACCTATGTTTGCTATACCTCCTCTATATTCCAAATTGGAAGTTCGAACTCTCTGATATGCATTTGTCTGGTCATGTATCGATTACTCAAACTGTTCATTGTGGTGTGAGGGGCAATATTGGACCTCCCTGCAATGCGGTAGGCTACATTGATAGATTAATTCTTGGTGAACATCATATGTATCAACGTCCAGTGTACAGAAGAACGAAGGAGTGCAGTGTTAATTCTCCTGACTATGGACCCTTGCCTCCTGATGCACCAGGATGGTGCAAGGCACCATTTGACCCAGAGGGTATTTTGAGCTCACTGATGGCTGCCGTTACATGTTTTGTGGGACTACATTTTGGGCAAATACTAGTGCTTTTTCAGGGTCATAGACACAAAGTATTTCTTTGGTCCACATTTTCCTTCCCTCTGTTGCTAATGGGATACGTTTTGGAGATTTTGGGAATTCCATTATCTAAAGCACTATACACATTAAGCTACATGTGCATCACTGCAGGAGCATCAGCCTTGATCTTGACCATAATTTATTATATTGTTGACATAAATCAATTCAGAAAACCTACAGCTGTACTACAGTGGATGGGGATGAATGCTCTTATCGTATATGCATTGGCTGCTTGTGACATTTTCCCTGCAGCTATCCAGGGTTTCTATTGGCGTACTCCGGAAAATAACTTGGTTGACGGCACAGAAGCTTTCTTACAGGCCATATTCCATTCCGAAAGGTGGGGTACGCTGGTCTTTGTAATGGTTGAGATTTTATTCTGGGGTCTGTTGACTGGTTTCCTTCACAAGAAAGGCATATATATAAAATTGGTCTGTTCCCTTCTTAGAAAGGCCTATGAAGACTTGGAGTGGGCCATCATCAAGGATTTTGCAATCTCGGTAATGTGTCCCATTACACCTTTACTTGATCCCAACACCATGGGTCTGCACTCAACCCTTAGGTTGGCCCTTTTGAATACTCTATGGAAAAAGAAAGAAAAGAAACGTAGAGGAGGGTACGCGCATGAACTAAGATTTGACACCATTTCAGTGGTGGGGTCTCAGCTAGCCTGTTTGAATGCATCGCAGTATATTTCTCAAAATTCCATGGCTTATGGAAGACACACTCATCGTCCAAACCTCGTTGAGGGGCGAAGAATGCGAGCTGGACATGCGCGTGTTAGTGGCCGACATCCATCTCGTGTCGTTTACATAAATACGTTGAATAGCAAGTTTCATGTGCTTTTCGTACTCCTATTGGGGAGGCTTATGCTATACAATACATTTTGTTCACCACCAAAACTGTTCGGTTTCCCACTGACAGAGCAGGAAGAATTTGCAGAAAGAAAAGACGAAGTGGGAGAAGACAGGAAATTCAGATGCCATTACTGCCGGAGAGCATTCACAAACTCACAGGCCTTAGGGGGTCACCAAAATGCACACAAGCGAGAACGCCAGAGAGCAAGGCGTTTCCATCTCCCCGCCGATCCCAGGCGCTTCATAGCAGCTGCACCAGTTGTCATCGCCCCACATTCAGCCACACTAGCAAACTTCAATAGTACCTCAAATATTCCAACTCTGCATCTACCCCACTATGAATCTCAACGTTCACTTTCAAACTCCACCATAAGCCACTTCCCGAGCCCCATTGTGATCCCATCGCCCTATACTACTACTCATTCGAGGCTTCCTTTTCAGCTCTATGACTCCCCCTCCGTACTTCCATCATCTGCTTCTCGTGTTGCTGAATTTTCCAAATCTGATAGACTCCCACAGAGGGATGTAGGTGCCAATGTTGATGTCCATCTAAAATTGTCTCTCTCAGGATAA 2439 0.4416 MSTCIDVTEGQRAPLLTSHRNSADQNEDAVVPFTSDKPTSTVTVPNQRLASLDVFRGLTVALMILVDDAGKAFPSINHSPWFGVTLADFVMPFFLFGVGVSVGLVFKKVSSKPSATKKVILRTVKLFLLGLLLQGGYFHGRGSLTYGVDVAKIRWLGILQRISIGYFLVAISEIWLVNNNISVNSPVAFVRKYFIQWIFSISLCSVYLCLLYLLYIPNWKFELSDMHLSGHVSITQTVHCGVRGNIGPPCNAVGYIDRLILGEHHMYQRPVYRRTKECSVNSPDYGPLPPDAPGWCKAPFDPEGILSSLMAAVTCFVGLHFGQILVLFQGHRHKVFLWSTFSFPLLLMGYVLEILGIPLSKALYTLSYMCITAGASALILTIIYYIVDINQFRKPTAVLQWMGMNALIVYALAACDIFPAAIQGFYWRTPENNLVDGTEAFLQAIFHSERWGTLVFVMVEILFWGLLTGFLHKKGIYIKLVCSLLRKAYEDLEWAIIKDFAISVMCPITPLLDPNTMGLHSTLRLALLNTLWKKKEKKRRGGYAHELRFDTISVVGSQLACLNASQYISQNSMAYGRHTHRPNLVEGRRMRAGHARVSGRHPSRVVYINTLNSKFHVLFVLLLGRLMLYNTFCSPPKLFGFPLTEQEEFAERKDEVGEDRKFRCHYCRRAFTNSQALGGHQNAHKRERQRARRFHLPADPRRFIAAAPVVIAPHSATLANFNSTSNIPTLHLPHYESQRSLSNSTISHFPSPIVIPSPYTTTHSRLPFQLYDSPSVLPSSASRVAEFSKSDRLPQRDVGANVDVHLKLSLSG 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3465 812 ProSiteProfiles Zinc finger C2H2 type domain profile. 662 689 IPR013087 -
Dere01g3465 812 SUPERFAMILY beta-beta-alpha zinc fingers 659 689 IPR036236 -
Dere01g3465 812 ProSitePatterns Zinc finger C2H2 type domain signature. 664 684 IPR013087 -
Dere01g3465 812 Gene3D Classic Zinc Finger 645 700 - -
Dere01g3465 812 PANTHER LD22376P 32 466 - -
Dere01g3465 812 Pfam Heparan-alpha-glucosaminide N-acetyltransferase, catalytic 48 172 IPR012429 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3465 Dere-ChrDere01 49138487 49150447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3465 635 703 C2H2 Transcription Factor Family AT5G06650 46.835 7.43e-18 80.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere01g3465 DUF1624 2.6e-05 CL0316