Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3460 ATGCACGTCTTCAGCTATCAAAGTACACTGTTAACTGTATGTGTCATTGAATGTGCGTCCGAAGAAAATGAATGTTTAGTTTCTTCCTCTACGCTCTCTCACTCAGATATGGCCAAAGCCAATGCTAAGGACAACTCTACTTCTGCTCCTCACCACCCTCCTTATTTTCATATGATAGCGGATGCCATATCAACATTGAATGACCGTACGGGTTCTAGCCAGCAAGCAATTGCCAAATTCATCGAGGACAAACACAAGAAACTGCTGCCCCCTAATTTCAGGACATTGCTCTCTGTTCAACTCAAGAAGTTCGTCAAATCGGAGAGGTTGTTCAAGGTGAAGAATTCCTTCAAGATCTCCTCCACCGAGAAGTTGATATTGGCAATTCGCGAAACCCAGAAAAACAAGACTGCCAAATCCACCAAGAAGGATGAGACGCCTGAGGAGAAGACTGTCAAGAAGACCACGGACAAGGGGTTGAAGACCAAGAGGCTCAGTCATGTCAAGACGCCGGAGGCTCTCAGGAAGGCCAACAAGGATACTAAGAAGAAGTCGGTGGCCTCGACCTCCTCGGCAGGAAAAGTGAAGCGTCTGAGTCACGTTAAGACCCCCGAAGCTATGAAGAAGAAGAAGACCAACGTTACCCCTGTGAAGAGAAAGACTACTTCCAAACCTATTAATTCTTCTAGGCCTGAAAAGAAGGCTAGGAAATAG 714 0.4608 MHVFSYQSTLLTVCVIECASEENECLVSSSTLSHSDMAKANAKDNSTSAPHHPPYFHMIADAISTLNDRTGSSQQAIAKFIEDKHKKLLPPNFRTLLSVQLKKFVKSERLFKVKNSFKISSTEKLILAIRETQKNKTAKSTKKDETPEEKTVKKTTDKGLKTKRLSHVKTPEALRKANKDTKKKSVASTSSAGKVKRLSHVKTPEAMKKKKTNVTPVKRKTTSKPINSSRPEKKARK 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3460 237 CDD H15 49 124 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dere01g3460 237 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 51 121 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dere01g3460 237 MobiDBLite consensus disorder prediction 198 212 - -
Dere01g3460 237 Pfam linker histone H1 and H5 family 52 119 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dere01g3460 237 PANTHER HISTONE H1 40 220 - -
Dere01g3460 237 SMART h15plus2 49 116 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dere01g3460 237 MobiDBLite consensus disorder prediction 133 237 - -
Dere01g3460 237 PRINTS Histone H5 signature 65 82 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Dere01g3460 237 PRINTS Histone H5 signature 38 59 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Dere01g3460 237 PRINTS Histone H5 signature 136 150 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Dere01g3460 237 PRINTS Histone H5 signature 193 212 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Dere01g3460 237 Gene3D - 47 145 IPR036388 -
Dere01g3460 237 MobiDBLite consensus disorder prediction 135 183 - -
Dere01g3460 237 SUPERFAMILY "Winged helix" DNA-binding domain 49 122 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3460 Dere-ChrDere01 49116779 49119263 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3460 53 119 Single Myb Histone (SMH) Gene Family AT1G72740 40.299 3.23e-10 57.0