Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3456 ATGGCCACCAGAAATCGAACTGTACTGTTCAGAAAGCATAGAGACGCCGTCAAGAGTGTGCGAGCCCCTTTGTCTTCCTCAGCGTCTGTTTCCGGTGGTCCCGTTATTGAAATGGTGAGCACCTCACTTATTCGTTCCAATCGATCTTCATATGCTCCTCTAAGTACCGAAGATCCAGGCCCCTCAAGAGATGCATTTACTGTGGGTTTGCCGCCTGCTTGGGTGGATGATTCTGAAGAAATATCTACAAATATTCAACGTGCTCGGGTTAAAATGTCTGAGCTAGTCAAACTTCATGCAAAGGCATTAATGCCCTCTTTTGGTGATGGCAAGGAAGATCAACATCAGATTGAGACCCTTACCCATGAGATTACAACTCTCTTGAGAAAATCTGAAATGAAGTTAAAAAGACTTTCTGCCACTACTGGATCCTCTGAGGATTCAAATGTCAGAAAGAATGTGCAGCGGTCCCTTGCTACAGACCTTCAGAACCTCTCAATGGACCTCCGGCGAAAGCAGTCAACATACTTGAAACGGTTGCAGCAGCAAAAAGAGGGTTATGATGGGGTTGACTTGGAGATGAACATTAATGGGAATAAATATGGTCTGCAGGATGATGGATTTAGTGATGTGGTCACCAAATCAGTGAACGAACTGGCTCAGATCATGAAGGATCTCTCTGTTCTTGTGATAGACCAGGGAACCATTGTGGATAGAATTGACTACAACATTCAGAATGTTGCTACATCTGTTGAAGAGGGCTTTAAGCAGTTGGAGAAGGCAGAGAGAACGCAGAAAAAAGGAGGAATGGTTATGTGTGCAACAGTGCTCGTTATAATGTGCTTCATCATGGTAGTCCTCTTGATTCTAAAGGAGATATTATTTTAG 888 0.4381 MATRNRTVLFRKHRDAVKSVRAPLSSSASVSGGPVIEMVSTSLIRSNRSSYAPLSTEDPGPSRDAFTVGLPPAWVDDSEEISTNIQRARVKMSELVKLHAKALMPSFGDGKEDQHQIETLTHEITTLLRKSEMKLKRLSATTGSSEDSNVRKNVQRSLATDLQNLSMDLRRKQSTYLKRLQQQKEGYDGVDLEMNINGNKYGLQDDGFSDVVTKSVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATSVEEGFKQLEKAERTQKKGGMVMCATVLVIMCFIMVVLLILKEILF 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3456 295 SMART tSNARE_6 194 261 IPR000727 -
Dere01g3456 295 SMART SynN_4 65 181 IPR006011 GO:0016020
Dere01g3456 295 SUPERFAMILY t-snare proteins 70 254 IPR010989 GO:0016020|GO:0016192
Dere01g3456 295 PANTHER SYNTAXIN 77 281 IPR045242 -
Dere01g3456 295 Pfam SNARE domain 235 287 IPR000727 -
Dere01g3456 295 Gene3D - 71 198 - -
Dere01g3456 295 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 212 261 IPR000727 -
Dere01g3456 295 Gene3D - 207 294 - -
Dere01g3456 295 CDD SNARE_syntaxin16 212 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3456 Dere-ChrDere01 49087752 49091323 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3456 1 295 SNARE and Associated Proteins AT5G26980 68.196 3.86e-151 424
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3456 01 49087752 49091323 Dere01g3456 01 49087752 49091323 ECH
Dere01g3456 01 49087752 49091323 Dere02g0072 02 771405 774895 ECH