Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3452 ATGCCCGGCGATACTCACACCCCTAATCCCAGGGTTCTCCTCTGCAATGCCGGGGCTGGTGCAGCTGCTGGAGTTATTGCTGCTACATTTGTTTGCCCATTAGATGTCATCAAAACTAGGTTTCAGGTTCATGGGCTGCCACAGCTCGCTAATGGACGTGTTAAAGGTAGTCTGATAGTCGGTAGTTTGGAACAAATATTTCACAAGGAGGGATTACGGGGTATGTATCGTGGGCTGGCTCCAACTGTGCTGGCCTTACTTCCAAACTGGGCGGTTTATTTTACTATATATGATCAACTCAAGAGTCTTCTCTGTTCTGATGATGGAAGCCACCATCTTTCAATTGGAGCTAACATGATAGCTGCTTCTGGTGCTGGAGCTGCAACAACCATTGCTACAAATCCACTTTGGGTTGTCAAGACTAGACTTCAAACTCAGGGAATGAGGCCTGGTATTGTGCCATATAGGAGTACATTATCTGCTTTGAGGAGAATTGCTCATGAGGAGGGCATTCGGGGCTTATACAGTGGGCTTGTACCTGCTCTGGCTGGTATCAGTCATGTTGCCATCCAGTTTCCAACATATGAGAAAATAAAATTTTATTTGGCAAATCAAGATAACACTGCAATGGACAAGCTTGGTGCACGTGATGTTGCCATTGCCTCTTCAGTCTCCAAAATATTTGCGTCCACATTGACTTATCCGCACGAGGTTGTACGGTCTAGACTGCAAGAACAAGGACACCACTCTGAAAAAAGGTACTCTGGTATGATTGACTGCATTAGAAAGGTATTTCAGCAAGATGGCATTGCTGGCTTTTATCGTGGTTGTGCAACCAATCTTCTGAGGACGACGCCAGCTGCTGTAATCACATTCACCAGCTTTGAAATGATACATCGGTTTCTTGTTTCACTATTCCCTTCTGACCCACGACCTCATATTTTGTGA 948 0.4536 MPGDTHTPNPRVLLCNAGAGAAAGVIAATFVCPLDVIKTRFQVHGLPQLANGRVKGSLIVGSLEQIFHKEGLRGMYRGLAPTVLALLPNWAVYFTIYDQLKSLLCSDDGSHHLSIGANMIAASGAGAATTIATNPLWVVKTRLQTQGMRPGIVPYRSTLSALRRIAHEEGIRGLYSGLVPALAGISHVAIQFPTYEKIKFYLANQDNTAMDKLGARDVAIASSVSKIFASTLTYPHEVVRSRLQEQGHHSEKRYSGMIDCIRKVFQQDGIAGFYRGCATNLLRTTPAAVITFTSFEMIHRFLVSLFPSDPRPHIL 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3452 315 FunFam Mitochondrial nicotinamide adenine dinucleotide transporter 1 110 305 - -
Dere01g3452 315 ProSiteProfiles Solute carrier (Solcar) repeat profile. 113 201 IPR018108 -
Dere01g3452 315 Gene3D Mitochondrial carrier domain 109 305 IPR023395 -
Dere01g3452 315 Gene3D Mitochondrial carrier domain 3 108 IPR023395 -
Dere01g3452 315 SUPERFAMILY Mitochondrial carrier 15 297 IPR023395 -
Dere01g3452 315 PRINTS Mitochondrial carrier protein signature 16 29 IPR002067 GO:0055085
Dere01g3452 315 PRINTS Mitochondrial carrier protein signature 128 146 IPR002067 GO:0055085
Dere01g3452 315 PRINTS Mitochondrial carrier protein signature 78 98 IPR002067 GO:0055085
Dere01g3452 315 PRINTS Mitochondrial carrier protein signature 29 43 IPR002067 GO:0055085
Dere01g3452 315 PRINTS Mitochondrial carrier protein signature 222 244 IPR002067 GO:0055085
Dere01g3452 315 FunFam Nicotinamide adenine dinucleotide transporter 1, chloroplastic 3 109 - -
Dere01g3452 315 ProSiteProfiles Solute carrier (Solcar) repeat profile. 11 103 IPR018108 -
Dere01g3452 315 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 14 305 IPR044712 GO:0006862|GO:0055085
Dere01g3452 315 Pfam Mitochondrial carrier protein 16 105 IPR018108 -
Dere01g3452 315 Pfam Mitochondrial carrier protein 113 204 IPR018108 -
Dere01g3452 315 Pfam Mitochondrial carrier protein 219 303 IPR018108 -
Dere01g3452 315 ProSiteProfiles Solute carrier (Solcar) repeat profile. 213 301 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3452 Dere-ChrDere01 49045342 49049463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3452 1 309 Chloroplast and Mitochondria Gene Families AT2G47490 78.964 1.32e-172 479
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3452 01 49045342 49049463 Dere01g3452 01 49045342 49049463 ECH