Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3449 ATGTCTGACGTTGTTGAGTCTAACAGTGGTGTTTGTTACTATTCCTTGCTCGGGATAAGCGAACAGGCCACCGATTGTGAAATCCGAGGAGCTTATCGTAAGATGGCCCTGAAATGGCATCCGGATAGGTGGACCAAAGACCCAAAGGTTGCTATAGAAGCTAAAAGTCGGTTTCAACAAATTCAAGAGGCTTATTCAGTTTTGTCTAATAAAGGAAAGAGAACCATATATGATGCTGGTTTGTTTGGTCTGATTGGAGAGGACGATGATGAGGGATTTGTTGATTTCATGCAAGAAATGATCTTGATGATGCAGAAGGAGAGCCCCCAGGAAAGCACCTTGGAGGATCTTGAGAGACTGCTAATGGACATTATGGCAGACTACGGTGAAGGAACGGGGAGATCTGGTTTTCTCTGGAACTCATTGACTGGTCCCCAAAAAAGGACTCGAATCTTATGA 459 0.4423 MSDVVESNSGVCYYSLLGISEQATDCEIRGAYRKMALKWHPDRWTKDPKVAIEAKSRFQQIQEAYSVLSNKGKRTIYDAGLFGLIGEDDDEGFVDFMQEMILMMQKESPQESTLEDLERLLMDIMADYGEGTGRSGFLWNSLTGPQKRTRIL 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3449 152 Gene3D DnaJ domain 2 91 IPR036869 -
Dere01g3449 152 ProSiteProfiles dnaJ domain profile. 12 81 IPR001623 -
Dere01g3449 152 Pfam DnaJ domain 13 78 IPR001623 -
Dere01g3449 152 ProSitePatterns Nt-dnaJ domain signature. 58 77 IPR018253 -
Dere01g3449 152 PRINTS DnaJ domain signature 14 32 IPR001623 -
Dere01g3449 152 PRINTS DnaJ domain signature 53 73 IPR001623 -
Dere01g3449 152 PRINTS DnaJ domain signature 32 47 IPR001623 -
Dere01g3449 152 SMART dnaj_3 11 73 IPR001623 -
Dere01g3449 152 SUPERFAMILY Chaperone J-domain 11 100 IPR036869 -
Dere01g3449 152 CDD DnaJ 12 70 IPR001623 -
Dere01g3449 152 PANTHER PUTATIVE, EXPRESSED-RELATED 8 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3449 Dere-ChrDere01 49002870 49003785 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3449 12 79 C2H2 Transcription Factor Family AT1G74250 42.029 1.01e-12 62.8