Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3442 ATGCTCGTTTCTTTGCGATTCGGCCATCGAATGGCCATCGAACATAGGAGAGGACAAGTCTTCAATTGTGATTTTATGTTCGTAAGGAGAGGACAAATGGCCATCGAACAGAGGAGAGGAGAAATGTTTTTCGGTCGACGGAAGAGAATGACGCAGCTGCTAAGGACGAAGCTCTCGGTGGTCTCACGTGCAGCAGGACGACACATGGGAGAGGGAACATCTTGGAGGAGAGCTTTGCACAAGAGAAAGGCTCCTTTCTCTGCGATAGCAGCTTCCACAGAGAGGAGAGAGGGTGAGGGGAAGATGGTTTCGCTGAAACTGCAGAAGCGGCTCGCGGCCAGCGTGCTCAAGTGCGGCAGAGGCAAAGTTTGGCTTGACCCAAATGAAGTCAACGAAATCTCCATGGCCAATTCCCGTCAAAACATAAGGAAGTTGGTAAAGGATGGATTTATCATCCGGAAGCCAACCAAGATTCACTCCCGATCACGTGCTCGTCGCATGAAGGAGGCCAAGAGGAAGGGGCGTCACTCTGGATATGGTAAGCGTAAGGGTACAAGAGAGGCTAGGCTTCCTACAAAAATTCTTTGGATGAGGAGGATGCGCGTGCTCAGACGCTTGCTTCGCAAGTACAGGGAATCAAAGAAGATTGACAAGCATATGTACCATGACATGTACATGAAGGTTAAGGGTAATGTTTTCAAGAATAAGAGAGTCCTAATGGAGAGCATTCACAAGTCTAAGGCTGAGAAGGCAAGAGAGAAGACCTTGTCTGACCAGTTTGAGGCTAAGCGTGCAAAGAACAAGGCTAGCCGGGAAAGGAAATTTGCTAGGAGGGAGGAGCGCCTGGCCCATGGTCCTGGAGACAAGCCAGTAGCAGCACCGACTGCTCCACCTGCTACGGCATCACAGCCAGCCCAGGCATCAAAGAAATCCAAGAAGTGA 942 0.5032 MLVSLRFGHRMAIEHRRGQVFNCDFMFVRRGQMAIEQRRGEMFFGRRKRMTQLLRTKLSVVSRAAGRHMGEGTSWRRALHKRKAPFSAIAASTERREGEGKMVSLKLQKRLAASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKFARREERLAHGPGDKPVAAPTAPPATASQPAQASKKSKK 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3442 313 MobiDBLite consensus disorder prediction 299 313 - -
Dere01g3442 313 MobiDBLite consensus disorder prediction 250 313 - -
Dere01g3442 313 MobiDBLite consensus disorder prediction 250 286 - -
Dere01g3442 313 PANTHER 60S RIBOSOMAL PROTEIN L19 102 288 IPR039547 GO:0003723|GO:0003735|GO:0022625
Dere01g3442 313 MobiDBLite consensus disorder prediction 158 180 - -
Dere01g3442 313 SUPERFAMILY Ribosomal protein L19 (L19e) 104 245 IPR035970 GO:0003735|GO:0005840|GO:0006412
Dere01g3442 313 FunFam Ribosomal protein L19 158 292 - -
Dere01g3442 313 Gene3D - 103 157 IPR015972 GO:0003735|GO:0005840|GO:0006412
Dere01g3442 313 FunFam Ribosomal protein L19 102 157 - -
Dere01g3442 313 Pfam Ribosomal protein L19e 105 246 IPR000196 GO:0003735|GO:0005840|GO:0006412
Dere01g3442 313 ProSitePatterns Ribosomal protein L19e signature. 108 127 IPR023638 -
Dere01g3442 313 Gene3D - 158 285 - -
Dere01g3442 313 MobiDBLite consensus disorder prediction 158 186 - -
Dere01g3442 313 CDD Ribosomal_L19e_E 105 268 IPR033935 GO:0003735|GO:0022625
Dere01g3442 313 Hamap 50S ribosomal protein L19e [rpl19e]. 104 250 IPR000196 GO:0003735|GO:0005840|GO:0006412
Dere01g3442 313 SMART Ribosomal_L19e_2 104 247 IPR000196 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3442 Dere-ChrDere01 48972386 48977378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3442 102 313 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 84.434 7.63e-126 356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3442 01 48972386 48977378 Dere01g3442 01 48972386 48977378 ECH