Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3441 ATGTGTGGTGGTGCTATCATCGCTGACTTCATACCTCGCCAACGTGGCCGCCGCCTTACCGCCTCCGACCTCTGGCCTAACTCCTTCGGCAAGCAAAATGATGACTTCGAGTTCCATTATCCTCAACCGCACAACTCTGAGGATCACTCTGTCACCCTCAAATCATCCCATCCTTCCCCAGTTGATGAGCGAGCCGAGAAGCCCAAGAGGCAGAGGAAGAACCTTTACAGAGGGATTCGACAGCGTCCGTGGGGTAAATGGGCTGCTGAGATTCGCGATCCCAGAAAGGGGGTTCGTGTTTGGCTTGGTACCTTCAACACCGCTGAAGAAGCAGCTAGGGCCTATGACAGAGAAGCTAGGAAAATTCGCGGCAAGAAAGCCAAAGTCAATTTCCCCAACGAAGAGGATGCCTACTCCCTTCAAGCTCGCCGTAATAATCCACCGCCTCTGCTCCGATCCCCAATTCCTTCTCTGTATCCACAACAGTACGGTTCTAACTTAAGTAATGTCCCTAAAAGTCTGAATTTGGAGTTTGGCTATGATCTGAACCAAGTTGGGGCAATGCCTTCCCATGGATTGGACACTGACCCACTTGTTAATTCTGGAGATGAAAATTCTGGATCTGGGTCAGAGAGTGCCTACTCCACGATGGAATTCATGGGCTCGAATCAGAACGTAAACAACTATATTTCTCAGAATTCTACAGTGGAGGAGGAAGGAAAAATGAACAAGGTGGTGTCGGAAGCCGAGGAGGAGAAGAACGAAATACAGAAGCTATCGGAGGAGCTGATGGCGTACGAGAACTTCATGAGGTTTTATCAGATTCCATATTATGATGGGCAGTCCGCGGCTCCCAATAACATTCAGGAAAGCGTGGTTGGTGATCTCTGGAGCTTCGACGATGAGGCCATTCCTGCATCTGTGGGTTCATCGGCCCTGTGA 942 0.5 MCGGAIIADFIPRQRGRRLTASDLWPNSFGKQNDDFEFHYPQPHNSEDHSVTLKSSHPSPVDERAEKPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDREARKIRGKKAKVNFPNEEDAYSLQARRNNPPPLLRSPIPSLYPQQYGSNLSNVPKSLNLEFGYDLNQVGAMPSHGLDTDPLVNSGDENSGSGSESAYSTMEFMGSNQNVNNYISQNSTVEEEGKMNKVVSEAEEEKNEIQKLSEELMAYENFMRFYQIPYYDGQSAAPNNIQESVVGDLWSFDDEAIPASVGSSAL 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3441 313 Pfam AP2 domain 76 124 IPR001471 GO:0003700|GO:0006355
Dere01g3441 313 FunFam Ethylene-responsive transcription factor 2 74 134 - -
Dere01g3441 313 Gene3D AP2/ERF domain 75 133 IPR036955 GO:0003700|GO:0006355
Dere01g3441 313 Coils Coil 242 269 - -
Dere01g3441 313 CDD AP2 76 133 IPR001471 GO:0003700|GO:0006355
Dere01g3441 313 SMART rav1_2 75 138 IPR001471 GO:0003700|GO:0006355
Dere01g3441 313 PANTHER DNA-BINDING DOMAIN 52 248 IPR044808 GO:0003700|GO:0009873
Dere01g3441 313 MobiDBLite consensus disorder prediction 189 213 - -
Dere01g3441 313 PRINTS Ethylene responsive element binding protein signature 98 114 IPR001471 GO:0003700|GO:0006355
Dere01g3441 313 PRINTS Ethylene responsive element binding protein signature 76 87 IPR001471 GO:0003700|GO:0006355
Dere01g3441 313 MobiDBLite consensus disorder prediction 41 71 - -
Dere01g3441 313 ProSiteProfiles AP2/ERF domain profile. 75 132 IPR001471 GO:0003700|GO:0006355
Dere01g3441 313 SUPERFAMILY DNA-binding domain 75 133 IPR016177 GO:0003677
Dere01g3441 313 MobiDBLite consensus disorder prediction 199 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3441 Dere-ChrDere01 48961720 48962770 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3441 1 133 AP2-EREBP Transcription Factor Family AT3G16770 56.522 1.29e-45 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere01g3441 AP2 9.4e-13 CL0081