Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3433 ATGTCGTCTCGTGATAAAGAAAAGAGATATATCAATAGCTCCGTTACGGTACTTGGTATTGGGGCCGAAATGATTGAGATCCAGTTCTTTCTGTTCCCCCCTTCCGCCCTTTTTTTCCCAAATTTCACCATGTATAACCTCAGAAGAAGAACGGCTCTTTTGCTCGCTCTCTTACCCGTTTTATCTCTAATCTTTGTGCTACTCTTCTGTTTACCCCATTTCTCCAACAACCCGAAAACAACTAAACCCCCAGAAACACGCCTTCATTTCCAAAAACACCTCCAAGTAGCCCACTCCACATGCCAAGGAACACTCTACCCACACCTCTGCGTCACAACACTCGCTTCCTTGCCAGATCTTACCTCCAAATCTGTGCCGCAAATCATCTCCTCTGTAGTCAATTACACGTTGTACGAGGTGAAATCCTCGTCCCACAACTGCAGTGGCCTCCGAAAGAAGCTCAGGAATCTAAACCCACTCGAGCAGAGAGCCCTCGATGATTGTCTCAAACTGTTTGATGACACCTTGTACGAGCTCAACACCACCATTGATGATCTCACGAACACCAAAATGAGCTCCAAGCGTTACCATGACTTGCAGACTCTTCTAAGCGGCGCAATGACTAATTTGTACACGTGTCTTGATGGCTTTGCTCACAGCCAAGGCATTGTGAGAGACAGAATCCAGGACAAGTTGTTCGAGATCTCGCACCATGTCAGTAACTCATTGGCCATGCTCAAGAAGGTGCCTGCGGTGAAGAAAGCTTCCAAGTCTGAGATATTCCCCGAGTATGGAAACATGAAACATGGGTTCCCTTCGTGGGTGTACTCTAAAGAACGAAAGCTCCTTGAAGCTCATGTGAATGAAACGAGGTTCGATCTTGTGGTGGCCAAAGATGGAACAGGCAATTTCACCACTATTGGGGAAGCAGTGGCTGCAGCTCCAAACTCCAGCACTTCCAGGATTGTGATACACATAAAAGCTGGGGCATACTTTGAGAATGTGGAGGTGATCAGGAAAAAGACCAATTTGATGTTTGTTGGGGATGGAATTGGAAAGACGGTTGTGAAAGCTAGCAGAAACGTTGTAGACGGATGGACTACTTTCCAATCAGCCACTGTAGCTGTGATGGGGGAGGGATTCATAGCAAAAGGCATAACCTTTGAGAACTCAGCAGGACCCAGCAAGCACCAAGCCGTGGCTCTCAGAAACAGTGCTGACCTATCAGCGTTCTACAGATGCAGCTTTGTGGGCTACCAGGACACCCTCTACGTCCATTCCCTCAGACAATTCTATAGAGAATGCGACATTTACGGTACCGTAGACTTCATCTTTGGGAACGCCGCAGCCTTGTTCCAAAACTGTAACTTATACGCTCGCAAGCCCAACGAAAACCAAAAGAACATGTTCACAGCTCAAGGCAGAGAGGATCCTAACCAGAACACTGGCATTTCTATCTTGAACTGTAAGATCGCAGCTGCTGCGGATTTAATCCCTTATAAATCCTCTTTCAAGACCTACTTGGGACGCCCATGGAAGATCCATTCAAGGACGGTTTATCTGAAGTCTTACATGGAGGATCTGATTGAGCCTGCGGGGTGGTTGGAGTGGAATGGAACGTTGGGGTTGGATACGCTGTACTATGGGGAGTACATGAATAAAGGTCCGGGTTCGAATGCAAGCGCAAGAGTTAGATGGCCTGGTTATAGGGTCATCAATTCCTCCAATGAGGCTTCTCAGTTCGCGGCTGCACAGTTTATTCAAGGAAATGACTGGTTGAATTCCACTGCAGTTCCTTTTTTCCTTAACTTGACCTGA 1818 0.4703 MSSRDKEKRYINSSVTVLGIGAEMIEIQFFLFPPSALFFPNFTMYNLRRRTALLLALLPVLSLIFVLLFCLPHFSNNPKTTKPPETRLHFQKHLQVAHSTCQGTLYPHLCVTTLASLPDLTSKSVPQIISSVVNYTLYEVKSSSHNCSGLRKKLRNLNPLEQRALDDCLKLFDDTLYELNTTIDDLTNTKMSSKRYHDLQTLLSGAMTNLYTCLDGFAHSQGIVRDRIQDKLFEISHHVSNSLAMLKKVPAVKKASKSEIFPEYGNMKHGFPSWVYSKERKLLEAHVNETRFDLVVAKDGTGNFTTIGEAVAAAPNSSTSRIVIHIKAGAYFENVEVIRKKTNLMFVGDGIGKTVVKASRNVVDGWTTFQSATVAVMGEGFIAKGITFENSAGPSKHQAVALRNSADLSAFYRCSFVGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAALFQNCNLYARKPNENQKNMFTAQGREDPNQNTGISILNCKIAAAADLIPYKSSFKTYLGRPWKIHSRTVYLKSYMEDLIEPAGWLEWNGTLGLDTLYYGEYMNKGPGSNASARVRWPGYRVINSSNEASQFAAAQFIQGNDWLNSTAVPFFLNLT 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3433 605 CDD PMEI-like_3 99 251 - -
Dere01g3433 605 Gene3D Invertase/pectin methylesterase inhibitor family protein 95 250 IPR035513 -
Dere01g3433 605 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 98 249 IPR035513 -
Dere01g3433 605 FunFam Pectinesterase 287 604 - -
Dere01g3433 605 SUPERFAMILY Pectin lyase-like 292 602 IPR011050 -
Dere01g3433 605 NCBIfam pectinesterase inhibitor domain 64 248 IPR006501 GO:0004857
Dere01g3433 605 ProSitePatterns Pectinesterase signature 2. 437 446 IPR033131 -
Dere01g3433 605 FunFam Pectinesterase 93 250 - -
Dere01g3433 605 SMART PMEI_2 92 245 IPR006501 GO:0004857
Dere01g3433 605 Gene3D - 288 604 IPR012334 -
Dere01g3433 605 Pfam Plant invertase/pectin methylesterase inhibitor 98 245 IPR006501 GO:0004857
Dere01g3433 605 Pfam Pectinesterase 293 590 IPR000070 GO:0030599|GO:0042545
Dere01g3433 605 PANTHER PECTINESTERASE 66 594 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3433 Dere-ChrDere01 48856214 48859534 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3433 121 604 Carbohydrate Esterase AT4G02320 54.418 0.0 565