Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3432 ATGGCTTCTTTGGTCTTCTTCAAATCCATGTTGTCATTTTTCCTTCTCCTTCTCCTCTTTGCATTCCAAGCTATTGCAGATGATTTTGCAACCAACCCTGTTCCTCCAGAAACCATACGTGAGACCATCCCAAACCCATCTTATTGCAGAGCCGTGCTTCCCAAGCAAAACGCTAAAGTGCACGACTTTGGGATACTCTCCATTCAAAAATCTCTAGTTCAATCCCGGCCACACCCAGGTTTCCGAAATGGTCGTTTACCTTTGAAGATGTCAAACCGAACAAGAGCCATCTACGACTCTGTTAGAGGCAGAAGGAAGCTTCAAGACGATGAAGAGGAAGAAGAAAGTGTTCTGATTAGTGACATAGTGGTTGTTAAGGGTGTGTATGAAGAATACGTGTCCATCCCCATCAATAAGCAGTTTCTCATGATGGTCGGAGATGGAATCAATCGCACAATTATCACCGGTAACCACAGCGCTGGTGATGGCTGGACAACATTCAATTCACCGACATTTGCTGTGGTAGCACCAGGGGACAGTTCAATCCCATCACTGCTCAGGGACGAACAGGCCCAAATCAGAACACAGGCGTGTCCATTCATATCTGTACTATTAAAGCGGCTGAGGATTTAG 633 0.4566 MASLVFFKSMLSFFLLLLLFAFQAIADDFATNPVPPETIRETIPNPSYCRAVLPKQNAKVHDFGILSIQKSLVQSRPHPGFRNGRLPLKMSNRTRAIYDSVRGRRKLQDDEEEEESVLISDIVVVKGVYEEYVSIPINKQFLMMVGDGINRTIITGNHSAGDGWTTFNSPTFAVVAPGDSSIPSLLRDEQAQIRTQACPFISVLLKRLRI 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3432 210 SUPERFAMILY Pectin lyase-like 122 178 IPR011050 -
Dere01g3432 210 Gene3D - 115 182 IPR012334 -
Dere01g3432 210 Pfam Pectinesterase 121 176 IPR000070 GO:0030599|GO:0042545
Dere01g3432 210 PANTHER PECTINESTERASE 122 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3432 Dere-ChrDere01 48851750 48853329 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3432 48 197 Carbohydrate Esterase AT4G02330 37.500 7.77e-35 127