Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3430 ATGGCCTCTAAGCACCTACCTCCTCTTGCACTCTCCTTTTTCCTTCTGCTTGCCTTATGTATTGCAGATAGCCATGCAGCCTCCACCGTTCCGCCAGAAGCCATTTGCGATTCGACCCCTGACTCTTCTTATTGCAAGTCTGTGCTTGCCAATCAAAACGGCGATATCTACGACTATGGTCGTATTTCTGTTCGCAAGTCCTTATCCCAGTCCCGTAAGTTCCTCAACCTAGTGGACTCGTATCTTCAATCTCCCTCCTCGCTCTCTCAATCCACAATTCGTGCTCTTCGAGATTGTCAATTCCTCGCTCAACTAAACTTGGAATACCTATCCAACGTCAATGGCATTGTTAATAATTCTAGTACGTTTCTACCCACTTCTCAAGCCGATGATCTTCATACCTTGTTTAGCGCCATTTTGACAAACCAGGAAACTTGTTTGGATAGCCTACAGGCCACTGCAACAGATACAAGAGTGAAGTACGGTATTTCCTTGCCACTCTCTGATGACACTAAGCTTCACAGTGTGTCTCTGGCCCTGTTCGTGAAGGGCTGGGTACCTGACAAGAAAATCACGACATCATGGTCAGCCAACAACGGGATGCATTTAGGTTTACCTATGAAAATGTCAGACCGAGTACGTGCGATTTATGATTCCGCGAGAAGCCGTGGGAGAAAACTCCTTCAAACCATTGACAGCCAAAGTGTAGTAATCAGTGACATTGTGGTTGTTAGTCAGGACGGAAGCGGAAACTTCACCACTATCAACGACGCCGTCGCTGCCGCCCCAAATAACACAGCTTCTACTGATGGCTACTTCTTAATTTATATCACCCAAGGCGTGTATCAAGAATATGTATCCGTAAACAAAACAAAGACTTACTTGATGCTAGTTGGTGATGGCATTAACCGCACGATCATCACCGGCAATCGCAGTGTTGGCGATGGTTGGACAACATTCAACTCGGCAACCTTTGCTGTGGTAGCACAAGGGTTCGTAGCTGTGAACATAACATTCAGAAACACGGCTGGGCCGAGAAAAGGGCAAGCTAACGCCACTATAACAGCAGCCGACGATCTGGCTCCCAGCGTTGGTTCAGTCCAAACGTACCTTGGGAGGCCATGGAAGCAGTACTCGAGGACGGTTTATATGGAGTCTTTCATGGACAGTTTGATCGATCCTTCGGGATGGCACGACTGGAATGGAAGTTTTGCATTGGATACATTGTACTACGCAGAGTATAATAACAGGGGACCTGGTTCGAACACTACCAACAGAGTGAAGTGGCCTGGTTACCATGTGATTAATGCTACGGATGCAGCCAACTTCACAGTGTCTAACTTCGTGCAGGGGGATGCATGGCTGCCTCAAACTGGCGTCCCATACTCGAGTGGATTATAG 1401 0.4747 MASKHLPPLALSFFLLLALCIADSHAASTVPPEAICDSTPDSSYCKSVLANQNGDIYDYGRISVRKSLSQSRKFLNLVDSYLQSPSSLSQSTIRALRDCQFLAQLNLEYLSNVNGIVNNSSTFLPTSQADDLHTLFSAILTNQETCLDSLQATATDTRVKYGISLPLSDDTKLHSVSLALFVKGWVPDKKITTSWSANNGMHLGLPMKMSDRVRAIYDSARSRGRKLLQTIDSQSVVISDIVVVSQDGSGNFTTINDAVAAAPNNTASTDGYFLIYITQGVYQEYVSVNKTKTYLMLVGDGINRTIITGNRSVGDGWTTFNSATFAVVAQGFVAVNITFRNTAGPRKGQANATITAADDLAPSVGSVQTYLGRPWKQYSRTVYMESFMDSLIDPSGWHDWNGSFALDTLYYAEYNNRGPGSNTTNRVKWPGYHVINATDAANFTVSNFVQGDAWLPQTGVPYSSGL 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3430 466 Pfam Pectinesterase 351 452 IPR000070 GO:0030599|GO:0042545
Dere01g3430 466 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 34 181 IPR035513 -
Dere01g3430 466 CDD PMEI-like_3 34 181 - -
Dere01g3430 466 Gene3D Invertase/pectin methylesterase inhibitor family protein 33 183 IPR035513 -
Dere01g3430 466 Gene3D - 236 354 IPR012334 -
Dere01g3430 466 SMART PMEI_2 27 180 IPR006501 GO:0004857
Dere01g3430 466 FunFam Pectinesterase 33 183 - -
Dere01g3430 466 SUPERFAMILY Pectin lyase-like 237 465 IPR011050 -
Dere01g3430 466 Gene3D - 355 466 IPR012334 -
Dere01g3430 466 PANTHER PECTINESTERASE 21 352 - -
Dere01g3430 466 Pfam Plant invertase/pectin methylesterase inhibitor 33 179 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3430 Dere-ChrDere01 48825611 48827357 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3430 32 466 Carbohydrate Esterase AT2G47550 42.402 7.38e-115 347