Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3429 ATGGCTTCCAAGCTCTTCTCCCCTCTTGTACTCTCGTTTTGCCTATTTCTTTCCTTGTTTGTATCATTGTCTATAGCTGTACCGCATAAGCATCATGGAAAAGCTTATGGTCATCCTGAAGCCATTTGCGACTCCACGGAACACCCTGCTTATTGCAAACATATTCTTGCTAATCAACACGGCAACAACATCTATGATTATGGACGCATCTGTTTTCGAAAATCCTTATCCCACTCCCGTAAGTTTTTGAACTTAGTGGACTCCTATCTTAAATCTCCCTCCTCTCTGTCTCAATCCACAGTTCGAGCTCTCCAAGACTGCCAATTCCTCTCTCAACTAAACTTCGAATACCTGGCAAACACCTATCCCACAGTTAATCAATCTAACGGTGTTCTTCCGTACTCTCAAGCCGAAGATGCTCAAACCTTGCTCAGTGCCATTCTCACAAATCAACAGACGTGTCTGGAGGGCCTTCAGACCACAGCTTCAGATCCTAGAGTGAAAGACGATCTTTCCGTCCCACTCTCCGACGACACTAACCTTAACAGTGTCTCTCTTGCTCTCTTCGTGAAGGGTTGGGTTCCTGACAAGAAAGTCGCATCACCATCTTCTCGCAATAATGGGAGACATTCAGGTTTCCAGAATGGTCGTTTACCCATGAAGATGTCAAAACGAGCACGTGACATTTATGATTCCGCTAGAGGACACGGCAGAAAATTGCTTCAAACTGTGGATGACATTGAGAGCGTAGTAATAAGGGACATTGTGGTTGTTAGTCAGGATGGAAGTGGAAACTACACCGCTATCAACGACGCTATAGCTGCCGTCCCAAACAACACAGCTGCTAATGAAGGCTACTTCTTGGTTTACATCACCGAGGGTGTATATCAAGAATACGTAAACATACCCAAAAACAAGAAGAACTTGATGCTAATGGGAGATGGAATCAACCGCACAATTATCACCGGCAATCGCAGCGTTGCGGATGGGTGGACAACATTCAATTCTGCAACATTTGCTGTGACGGCACCAGGGACTGCAACATCTATCCACGCTTACCCTTGA 1065 0.4535 MASKLFSPLVLSFCLFLSLFVSLSIAVPHKHHGKAYGHPEAICDSTEHPAYCKHILANQHGNNIYDYGRICFRKSLSHSRKFLNLVDSYLKSPSSLSQSTVRALQDCQFLSQLNFEYLANTYPTVNQSNGVLPYSQAEDAQTLLSAILTNQQTCLEGLQTTASDPRVKDDLSVPLSDDTNLNSVSLALFVKGWVPDKKVASPSSRNNGRHSGFQNGRLPMKMSKRARDIYDSARGHGRKLLQTVDDIESVVIRDIVVVSQDGSGNYTAINDAIAAVPNNTAANEGYFLVYITEGVYQEYVNIPKNKKNLMLMGDGINRTIITGNRSVADGWTTFNSATFAVTAPGTATSIHAYP 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3429 354 PANTHER PECTINESTERASE 21 345 - -
Dere01g3429 354 FunFam Pectinesterase 40 191 - -
Dere01g3429 354 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 41 189 IPR035513 -
Dere01g3429 354 Gene3D Invertase/pectin methylesterase inhibitor family protein 40 191 IPR035513 -
Dere01g3429 354 Pfam Pectinesterase 256 344 IPR000070 GO:0030599|GO:0042545
Dere01g3429 354 SUPERFAMILY Pectin lyase-like 252 346 IPR011050 -
Dere01g3429 354 SMART PMEI_2 34 188 IPR006501 GO:0004857
Dere01g3429 354 Gene3D - 250 351 IPR012334 -
Dere01g3429 354 CDD PMEI-like_3 41 189 - -
Dere01g3429 354 Pfam Plant invertase/pectin methylesterase inhibitor 40 187 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3429 Dere-ChrDere01 48819641 48821007 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3429 10 344 Carbohydrate Esterase AT4G02330 47.278 2.32e-100 306