Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3428 ATGGCTTCCAATCTAACTTCTCTCTCAACGATGGCATTTCTGCTTCTCCTTCCCTTGCTCACCTCTTTAGCTTTTGCAGACACTGCTAGTGCTCCCTCCACTTCTGTCTCCCCTGGAACTCTCTGCAACTCCACCCCGGACCCTTCATATTGCAAGTCTGTTCTTCCTTCCCAAAAAGGCAATGTCTACGACTTTGGCCGTTTTTCTGTCAGGAAATCCTTATCACAGTCTCGAAAATTCTTGAACCTAGTTGACAAATATCTCCAACGACGGTCCACTTTGTCAGCCGCCGCCGTTCGAGCACTCGAAGATTGCCGGACGCTTGGTGACCTCAACTTCGATTTCCTTTCCAATTCCTTTCAAACTGTGGGCAAAACAACCAGGTTTCTTCCCAGTTCGCAAGCTGACAATATCCAAACGCTTCTGAGTGCCATCTTAACTAACCAACAGACCTGCTTGGATGGCCTTCAAGACACTGCTTCAGCTTGGAGCGTAAAAAATGGCCTCTCTGTCCCACTTTCTAACGACACCAAGCTATATAGTGTGTCTTTGGCTCTATTCACAAAGGGGTGGGTTCCAAATACCAAAAAGAAAACGACTGGTTTTCAGCCAACCAAGACACAACTTAGATTCCAAAATGGGCGTTTGCCACTTAATATGTCAAGCAGAACTCAGGCCATCTACGAGTCTGTGAGTCGGAGGAACCTGCTTCAGACAACCACCGTGGGCAATGTAGTTAACGTGAGGGACATCGTAACGGTGAGTCAAGATGGAACTGGAAACTTCACCACCATCAATGACGCCATTGCTGCTGCTCCAAACAAGTCTTCCTCTGCAGATGGCTACTTCCTCATCTACGTCACCGCAGGTGTTTACGAAGAATACGTCACCATCGATAAGAAAAAGACATACTTGATGATGGTCGGAGACGGTATCAACAAGACAATCATTACAGGCAACCGAAGTGTCGTTGATGGGTGGACAACCTTCAACTCCGCAACTTTTGCTGTGGTAGGACAAGGATTCGTCGGGGTGAATATAACGTTTCGTAACACCGCCGGACCAGAAAAGCACCAAGCGGTTGCAGTCCGAAACGGAGCAGATTTATCCACGTTGTACAGCTGCAGCTTCGAGGGGTACCAGGACACATTATATGCGCATTCTCTGAGACAATTCTACAGAGAATGCGATATCTACGGCACAGTGGATTTCATATTCGGCAACGCCGCCGTCGTGTTCCAAAACTGCAATCTGTATCCCCGTTTACCCATGAGTGGGCAATTCAACGCCATCACTGCTCAGGGTCGAACCGACCCGAATCAAATCACGGGCATTTCGATCCATAACTGCACCATTCGAGCAGCAGACGATCTGGCTCCGAGCGTTGGTTCGGTGAAAACGTATCTCGGGAGGCCGTGGAAGGAGTACTCGAGGACGGTTTACATGCAGAACTTCATGGATAGTGTGATTGACAGTGCGGGTTGGCAACAATGGAATGGTAATTTTGCGTTAAGCACTTTGTATTATGCGGAGTTTAATAACAGTGGGCCCGGATCAAGCACTGCCGACAGAGTGACGTGGCCTGGGTATCGTGTGATTAACGCTACAGATGCAGCTAATTTCACGGTGTCCAACTTCTTGCTCGGCGATGACTGGTTGCCTCTCACTGGAGTCACGTATACCAGCAACTTGATAAGTTGA 1701 0.4844 MASNLTSLSTMAFLLLLPLLTSLAFADTASAPSTSVSPGTLCNSTPDPSYCKSVLPSQKGNVYDFGRFSVRKSLSQSRKFLNLVDKYLQRRSTLSAAAVRALEDCRTLGDLNFDFLSNSFQTVGKTTRFLPSSQADNIQTLLSAILTNQQTCLDGLQDTASAWSVKNGLSVPLSNDTKLYSVSLALFTKGWVPNTKKKTTGFQPTKTQLRFQNGRLPLNMSSRTQAIYESVSRRNLLQTTTVGNVVNVRDIVTVSQDGTGNFTTINDAIAAAPNKSSSADGYFLIYVTAGVYEEYVTIDKKKTYLMMVGDGINKTIITGNRSVVDGWTTFNSATFAVVGQGFVGVNITFRNTAGPEKHQAVAVRNGADLSTLYSCSFEGYQDTLYAHSLRQFYRECDIYGTVDFIFGNAAVVFQNCNLYPRLPMSGQFNAITAQGRTDPNQITGISIHNCTIRAADDLAPSVGSVKTYLGRPWKEYSRTVYMQNFMDSVIDSAGWQQWNGNFALSTLYYAEFNNSGPGSSTADRVTWPGYRVINATDAANFTVSNFLLGDDWLPLTGVTYTSNLIS 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3428 566 NCBIfam pectinesterase inhibitor domain 9 188 IPR006501 GO:0004857
Dere01g3428 566 CDD PMEI-like_3 40 191 - -
Dere01g3428 566 PANTHER PECTINESTERASE 26 554 - -
Dere01g3428 566 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 40 189 IPR035513 -
Dere01g3428 566 Pfam Pectinesterase 252 550 IPR000070 GO:0030599|GO:0042545
Dere01g3428 566 SMART PMEI_2 33 186 IPR006501 GO:0004857
Dere01g3428 566 SUPERFAMILY Pectin lyase-like 250 562 IPR011050 -
Dere01g3428 566 Pfam Plant invertase/pectin methylesterase inhibitor 40 186 IPR006501 GO:0004857
Dere01g3428 566 FunFam Pectinesterase 245 564 - -
Dere01g3428 566 ProSitePatterns Pectinesterase signature 2. 398 407 IPR033131 -
Dere01g3428 566 Gene3D - 245 564 IPR012334 -
Dere01g3428 566 FunFam Pectinesterase 39 189 - -
Dere01g3428 566 Gene3D Invertase/pectin methylesterase inhibitor family protein 39 189 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3428 Dere-ChrDere01 48804763 48806567 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3428 8 566 Carbohydrate Esterase AT4G02330 64.286 0.0 741