Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3425 ATGGATATGGACACAGACACACACGCTAAATATGCCTACAACGGTAAGGTCATGCTCGGCGCCGCCATTCTTCTCTTCTTTTTTGTTATTATCATCATTTTTCTTCACACCTATGCTTACTCCTGCTTCCGCCGCCGCCGCAATCCCCAACGCCATCGCCGCTACAGTCGACGCCTCTTCACAACCATACCCACCGTCCATCATAAGGGCCTTGACCCTTCTCTTTTCGATTTCCTCCCCACCTTCACTTACTCCTCCGCCACCCACCGCCACCTGCAGGAATGCGCCGTCTGCTTATCAGAGTTCGAAGAAGACGATGAAGGTCGCGTCCTCCCAAACTGCAACCACGGTTTCCACACCCATTGCATCGATACATGGTTTCGATCTCACTCCAACTGCCCCATATGCCGAGCTCCGGTGCAACCGCCAAAAGTCTCGCCGCAGACAACGGGGGCGTGTGTTTCCGATGGAGAATTACCGGGTTGCTCGCATCTTCCTCCGCCGATTGGATGCCCCAGAAAGGGATTTGATTTGGAGGTTCTTAGCGTAGTAGTAGAGGTGAGGGGGGAGGAATTAGACGAAACGTTGAGAAGTTCGGCGTCCGGTTCAGCCGGGGAGGCCGGTTTAAGGAGCTCCGATGAACAGATTTTGATATTGAAGCGAGTATAG 669 0.5321 MDMDTDTHAKYAYNGKVMLGAAILLFFFVIIIIFLHTYAYSCFRRRRNPQRHRRYSRRLFTTIPTVHHKGLDPSLFDFLPTFTYSSATHRHLQECAVCLSEFEEDDEGRVLPNCNHGFHTHCIDTWFRSHSNCPICRAPVQPPKVSPQTTGACVSDGELPGCSHLPPPIGCPRKGFDLEVLSVVVEVRGEELDETLRSSASGSAGEAGLRSSDEQILILKRV 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3425 222 CDD RING-H2_EL5-like 94 137 - -
Dere01g3425 222 Pfam Ring finger domain 94 137 IPR001841 -
Dere01g3425 222 FunFam E3 ubiquitin-protein ligase ATL6 60 143 - -
Dere01g3425 222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 143 IPR013083 -
Dere01g3425 222 SMART ring_2 95 136 IPR001841 -
Dere01g3425 222 SUPERFAMILY RING/U-box 80 143 - -
Dere01g3425 222 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 7 141 IPR044675 -
Dere01g3425 222 ProSiteProfiles Zinc finger RING-type profile. 95 137 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3425 Dere-ChrDere01 48788244 48788912 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3425 11 141 Rapid Response to Elicitors AT3G16720 50.000 8.80e-39 134