Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3413 ATGAGTCGCGGGGCAGCAACTGGGGCGAAGGGGAAGAAGAAGGGAGCGACCTTCGTGATCGACTGTGCGAAGCCAGTGGAAGATAAGATCATGGACATCGCTTCGCTGGAGAAATTCCTTCAGGAGAGGATCAAAGTGGGTGGCAAGGCCGGTGCGCTTGGCGATTCCGTCACTGTCACTCGGGACAAGAACAAGATTACCGTTACCTCCGACAGCAACTTCTCCAAAAGGTATCTGAAATACTTAACTAAGAAGTATTTGAAGAAGCACAATGTGAGGGATTGGCTTAGGGTTATTGCTTCCAACAAGGATCGCAATGTTTATGAGCTGAGATACTTCAACATTGCTGAGAACGAGGGTGAGGAGGAAGAATGA 375 0.4907 MSRGAATGAKGKKKGATFVIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTRDKNKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAENEGEEEE 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3413 124 PANTHER 60S RIBOSOMAL PROTEIN L22 2 123 IPR002671 GO:0003735|GO:0005840|GO:0006412
Dere01g3413 124 Pfam Ribosomal L22e protein family 14 122 IPR002671 GO:0003735|GO:0005840|GO:0006412
Dere01g3413 124 Gene3D - 5 124 IPR038526 -
Dere01g3413 124 FunFam 60S ribosomal protein L22-2 5 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3413 Dere-ChrDere01 48671303 48672507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3413 1 124 Cytoplasmic Ribosomal Protein Gene Family AT3G05560 85.484 1.87e-66 195