Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3410 ATGATCATAATAGCACGCCTCATGTTACTTCTTGCTTTTTCGGGTCTGTCGTTCCTACCAAGTACAAGCCAAATGGTATCTGCAAAAGGGAACGATTATGCCAGGGAAGCTTGCAAAGTGACTGGATATCCAGACCTCTGTATCCACTTGCTAGCTCCGTTTTCTAGCTCTGCAAAACGAAGCCCCAGCAAGTGGGCACGTGCAGGAGTGTCGGTGACTATAGGGGAGGTTAAGATTGTTCAAGCATATCTGGGAAAACTCAAGAGAAACCAGCTTATGAGAGGGAGAAACAGGGTTGCTCTGTCAGATTGTATAGAGTCTTTTGCAGATGCCCTGGATGAGCTTCACAGATCACTTGGTGTACTCAGAAGGCTAAGCAGAAGCACATTTGGTACACAAATGGGAGATCTCAAGACATGGTTAAGTTCTGCTCTCACTGATGAAGACACTTGCCTGGATAGCTTTCAAGGACAAAAGGGGAGGCAAATTCAAATGCTGCGAAATCGAGTTTTGAATGTCTCTCATATAACCAGTAATGCTCTTGCTCTTGCGAACAAGCTTGCCACCACTGGTTTGCGAAGCACCAATGATCCATAG 597 0.4573 MIIIARLMLLLAFSGLSFLPSTSQMVSAKGNDYAREACKVTGYPDLCIHLLAPFSSSAKRSPSKWARAGVSVTIGEVKIVQAYLGKLKRNQLMRGRNRVALSDCIESFADALDELHRSLGVLRRLSRSTFGTQMGDLKTWLSSALTDEDTCLDSFQGQKGRQIQMLRNRVLNVSHITSNALALANKLATTGLRSTNDP 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3410 198 FunFam Pectinesterase inhibitor 3 29 188 - -
Dere01g3410 198 SMART PMEI_2 29 183 IPR006501 GO:0004857
Dere01g3410 198 CDD PMEI-like_3 37 189 - -
Dere01g3410 198 Pfam Plant invertase/pectin methylesterase inhibitor 35 183 IPR006501 GO:0004857
Dere01g3410 198 PANTHER PECTINESTERASE INHIBITOR-LIKE 9 184 - -
Dere01g3410 198 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 34 187 IPR035513 -
Dere01g3410 198 Gene3D Invertase/pectin methylesterase inhibitor family protein 30 189 IPR035513 -
Dere01g3410 198 NCBIfam pectinesterase inhibitor domain 6 187 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3410 Dere-ChrDere01 48652549 48653145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3410 35 192 Carbohydrate Esterase AT3G14310 33.129 2.57e-19 83.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3410 01 48652549 48653145 Dere01g3410 01 48652549 48653145 ECH