Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3408 ATGGAATCCCTAGGGTTCTGAAAAATGAGTAGACGTGCAAGCAGAACTGTCTACGTTGGGAATTTACCGGGTGATATTCGTGAAAGAGAAGTGGAAGATCTGTTTCTCAAGTATGGACACATAACTCATATTGACTTGAAGGTTCCACCAAGGCCCCCTGGTTATGCATTTGTAGAGTTTGAGGATGCTCAAGATGCTGAAGATGCAATTCGCGGTCGTGATGGCTATGATTTTGATGGGCATCGGTTACGGGTAGAGCCTGCACATGGTGGACGTGGTCATTCATCATCAAGAGATCGATATAGTAGTCACAGCAATGGTCGGGGTGGACGTGGGGTTTCTAGGCGCTCTGAGTACCGTGTTCTGGTCACTGGGTTGCCCTCTTCTGCGTCCTGGCAGGATCTTAAAGATCACATGCGGAAGGCAGGGGATGTTTGTTTCTCTCAAGTTTTTCATGATGGAAGAGGTACAACTGGAATCGTGGATTACACAAACTATGATGACATGAAATATGCTATCAAGAAGCTTGATGACTCTGAGTTCAGGAATGCTTTTTCCAGAGCTTATGTTCGTGTGAGGGAATATGATTCAAGGCGGGACTCCTCTAGAAGTCCTAGTCGTGGCAGATCTTATTCTAGGGGAAGAAGTTATAGCCGCAGTCGTAGTCGTAGTTACAGTCGAGGGCATAGCCATAGCAAATCTCCAAAGGGTAAATCTTCACAGCGTTCACCTGCTAGATCTCCTTCAAGATCTGTTTCTCGCTCACACTCTCGCTCTAAGTCAAGGTCCCGTTCCTTATCAGGATATGGATACTTGCAGCAAACTGGGAATTGGAAATTAGGAACTTGGTGGGATTTGGTTCAATTGCCTGCAACTCAATTTGTTGTGGAGATGTCCATGGGTGCTAGATTGGGAACCAAGGAGATCATGGATTGCTATTTTAGAGCTGGATGTCTTTTGTGCTAA 966 0.4576 MESLGFXKMSRRASRTVYVGNLPGDIREREVEDLFLKYGHITHIDLKVPPRPPGYAFVEFEDAQDAEDAIRGRDGYDFDGHRLRVEPAHGGRGHSSSRDRYSSHSNGRGGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSRAYVRVREYDSRRDSSRSPSRGRSYSRGRSYSRSRSRSYSRGHSHSKSPKGKSSQRSPARSPSRSVSRSHSRSKSRSRSLSGYGYLQQTGNWKLGTWWDLVQLPATQFVVEMSMGARLGTKEIMDCYFRAGCLLC 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3408 321 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 119 197 IPR000504 GO:0003723
Dere01g3408 321 CDD RRM1_SF2_plant_like 16 86 - -
Dere01g3408 321 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 10 264 - -
Dere01g3408 321 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 121 183 IPR000504 GO:0003723
Dere01g3408 321 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 84 IPR000504 GO:0003723
Dere01g3408 321 SMART rrm1_1 16 86 IPR000504 GO:0003723
Dere01g3408 321 SMART rrm1_1 120 191 IPR000504 GO:0003723
Dere01g3408 321 SUPERFAMILY RNA-binding domain, RBD 14 186 IPR035979 GO:0003676
Dere01g3408 321 CDD RRM2_SF2_plant_like 119 194 - -
Dere01g3408 321 Gene3D - 7 116 IPR012677 -
Dere01g3408 321 MobiDBLite consensus disorder prediction 71 115 - -
Dere01g3408 321 MobiDBLite consensus disorder prediction 214 236 - -
Dere01g3408 321 FunFam serine/arginine-rich splicing factor SR34A-like 119 196 - -
Dere01g3408 321 FunFam ASF/SF2-like pre-mRNA splicing factor SRP31 9 118 - -
Dere01g3408 321 MobiDBLite consensus disorder prediction 199 264 - -
Dere01g3408 321 Gene3D - 118 196 IPR012677 -
Dere01g3408 321 MobiDBLite consensus disorder prediction 71 116 - -
Dere01g3408 321 MobiDBLite consensus disorder prediction 237 252 - -
Dere01g3408 321 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 90 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3408 Dere-ChrDere01 48622827 48627128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3408 16 203 Eukaryotic Initiation Factors Gene Family AT4G34110 25.381 4.65e-06 46.2