Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3405 ATGAGTTCTCCTTGCGCTGCGTGCAAGCATTTGAGGCGGAAATGTACGCGAGAATGTGTGTTTGCACCATACTTTCCACCGGACAACCCTCAGGAATTTGCGCAAGCATACACGACTTCCCACCAGACTTTATTTTCGGATCGGGCTCCTCTGCTTATCAGGTGGAAGGAGCTGCAAATGAAGATGGAAGGACTCCAAGTGTCTGGGATACCTTCGCTCATGCTGGTTTAG 231 0.5022 MSSPCAACKHLRRKCTRECVFAPYFPPDNPQEFAQAYTTSHQTLFSDRAPLLIRWKELQMKMEGLQVSGIPSLMLV 76
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3405 76 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 2 36 - -
Dere01g3405 76 Pfam Lateral organ boundaries (LOB) domain 4 36 IPR004883 -
Dere01g3405 76 ProSiteProfiles LOB domain profile. 3 76 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3405 Dere-ChrDere01 48607128 48611459 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3405 2 34 AS2 family AT5G66870 87.879 3.55e-16 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Dere01g3405 LOB 2.6e-12 No_clan