Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3399 ATGAAGTTCTGCAAGACGTACCAGCAGTACATGCAAGGGCAGGAGAAGAAACTACCTGGGGTTGGCTTCAAGAAGCTCAAGAAGATCTTGAAGAAGTGCAGAAAGGACTATCAACCCCAGCATCAAAATCGCCTCGTTAATGAACCCCTCGCCGTCCAAACATGCCCTGATCATTGCCCGGTGTGCGATGGGACATTCTTCCCTTCTCTTCTCAGTGAAATGTCAGAAATAGTAGGCTGCTTTAATAAGCGAGCACGGAAATTGCTGGACCTACATCTTGCTTCTGGCTTCAGAAAGTACATGTTTTGGATCAAAGGAAAATTGCGAAGAAGCCACACTGCTCTCATTCAAGAAGGCAGAGATCTGGTTACCTATGCACTGATAAATGCCGTTGCTATTCGAAAAATACTAAAGAAATATGACAAGGTCCATTATTCGAAGCAAGGGCAATTATTTAAGTCACAAGCTCAGAGTATGCACATGGAAATTCTTCAGAGTCCATGGTTTTGTGAACTGATGGCCTTCCACATCAATTTAAGGGAAACCAAGGCCAAATCAAGCAAGGCAGCCGTTTTGTTTGATGGATGTTATCTCACATTTAAAGATGGAAAACCATCAATTACTTGTGAGCTCTTTGATTCCATCAAACTTGATATTGACTTGACTTGTTCTATATGCTTGGACACAGTATTTGATCCAGTTTCTCTTACTTGTGGCCATCTATTCTGCTACATGTGTGCTTGCTCAGCTGCATCAGTAACTATTGTTGATGGACTCAAGGAAGCAACTCCTAAAGCAAAATGTCCTCTGTGCCGAGAGAGAGGAGTTTATGAAGGTGCTGTCCACTTGGAAGAATTGAACATCCTGTTAGGCCGAAGGTGTCAAGAATACTGGGAAGAAAGAGTTCAGACAGAGAGGGCAGAGAGGCTTAAACAAATAAAGCAGCATTGGGAATCGGAGTGTAGGGCTTTTGTTTGTTATTTGACTCTCTCAGGAAAGAATGCCTTCTCTACCTTGGCGATGAGGTGTAGAGCAGAGGGTTCTTCGGTATTGATAACTGAAATCATGAAAGAGAACCCACCAATAAGGAAGGTGGTTTAA 1101 0.4296 MKFCKTYQQYMQGQEKKLPGVGFKKLKKILKKCRKDYQPQHQNRLVNEPLAVQTCPDHCPVCDGTFFPSLLSEMSEIVGCFNKRARKLLDLHLASGFRKYMFWIKGKLRRSHTALIQEGRDLVTYALINAVAIRKILKKYDKVHYSKQGQLFKSQAQSMHMEILQSPWFCELMAFHINLRETKAKSSKAAVLFDGCYLTFKDGKPSITCELFDSIKLDIDLTCSICLDTVFDPVSLTCGHLFCYMCACSAASVTIVDGLKEATPKAKCPLCRERGVYEGAVHLEELNILLGRRCQEYWEERVQTERAERLKQIKQHWESECRAFVCYLTLSGKNAFSTLAMRCRAEGSSVLITEIMKENPPIRKVV 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3399 366 CDD RING-HC_BAH1-like 213 286 - -
Dere01g3399 366 ProSitePatterns Zinc finger RING-type signature. 238 247 IPR017907 -
Dere01g3399 366 SMART ring_2 223 271 IPR001841 -
Dere01g3399 366 Pfam Zinc finger, C3HC4 type (RING finger) 220 273 - -
Dere01g3399 366 SUPERFAMILY RING/U-box 216 274 - -
Dere01g3399 366 CDD SPX_BAH1-like 2 150 - -
Dere01g3399 366 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 210 328 IPR013083 -
Dere01g3399 366 ProSiteProfiles SPX domain profile. 1 154 IPR004331 -
Dere01g3399 366 ProSiteProfiles Zinc finger RING-type profile. 223 272 IPR001841 -
Dere01g3399 366 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 325 IPR033326 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3399 Dere-ChrDere01 48561145 48563449 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3399 220 272 C3H Transcription Factor Family AT4G28270 43.103 2.77e-07 48.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3399 01 48561145 48563449 Dere01g3399 01 48561145 48563449 ECH