Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g3393 ATGGTTGAAACCAGGCGCAGTTCCTCTTCTTCCAAGCGCTCTCTCTCTTCACCCCCTCCTTCCAACGCCAAACGATCTAAGGTGTCCGAGGATGCGTCATCAACCAGTCTCCCATCAGCTGAAATTCTTGGTCAGGTCAACGAATCTGGAAATGAATCTCGGGAACCGGAGATTCGCCCATCTGATCTGCCAGATGCCGATTCATTGAAGGCTGTGGACGTGAGTGATGCGATGTTACCTGTGAAATCTCCTACAGTGCCTGTCGAAGGCGAGGCTCTGGTGTCGCCGAGGTCTTTAGGTGAAACTGCGGTGGAAGCGGAGAAATCAAAGTCTGTTGGCGCGGCAGCGCTTGGGCGGTCAAAGAAACGCCCTACGAAATCCACGAAATCAGGCCCCAAGGCTGCATGGGGAAAGCTTCTATCTCAATGCTCTCAGAATCCTCATCTGTTCATGTCTGGGCTCTTCACTGTTGGTCAAGGACGTCAGTGTGATTTATGGCTTAAAGATCCTGCTGCCAGTAATATTTTGTGCAAATTGAGGCACATAGAGCGTGGAGGTTCATCCGTTGCATTACTGGAAGTCGTAGGAGGTAAAGGCGCTGTCCAAGTCAATGGCAGGAATTACCAAAAAAATTCCAGTGTCATCTTAAGTGGTGGTGATGAGGTGGTCTTTAGTTCTTCTGGCAAGCATGCTTATATTTTTCAGCAGCTCACCAATAATAATATGACCACAACAGGGGTACCTTCTTCTGTAAGTATTTTAGAAACCCAAAGTGAACCAATTAAGGGTATGCGTATTGAAGCTAGATCCGGAGATTCTTCAGCTGTTGCTGGAGCATCAATATTAGCATCTTTATCTAACCTTCATAAAGATTTATCTCTTCTTCCGCCTCCTGCTAAAACTGGTGAGAATGTCCAACAGAATGCTGAAATTTCGTCTGTGCCTTCTGGCCAAGGGGATGATAATGTGGACAATGAAATGAAGGATATCCTGAATAATGATGATCCAAATGGAGTCATTTTAACTGAGAAAACTGTTCTTGCATCCTCTACTACTGCCAATGAAAATCCTAGTCTTGACAGTGTGGAAATGGATGCTGGCGTCGACGCAGATGTTGGGAAGGTAAATGGGCCTACCTATGAATTAAGGCCATTGTTGCGTATGCTTGCTGGTTCTAGTACTGAATTTGATTTAAGTGGTAGCATTTCCAAAATATTGGAAGAACGAAGGGATTTAAGAGAACTCCTTAAGGATGTTGATCCCCCTACAATATTGGCATCAACCAGGCGGCAGGCATTTAAGGAGAGTTTACAAGAAGGAATTCTAAGTCCTGATGATATTGATGTCTCATTTGAAAGTTTCCCATATTTTCTAAGTGATACAACAAAGAATGTTTTGACTGCTTCTACATTTATTCATTTGAAGTGCAATGGTTTTGCAAAATATGCTTCAGATCTCCCTTCGGTGTGCCCACGAATATTGTTATCTGGTCCTGCTGGTTCAGAGATATATCAGGAAACTTTGTCCAAGGCCCTTGCTAAGCATTTTGGCGCCAGGGTGCTGATTGTGGATTCTCTATCATTGCCTGGTGGTACACCGCCAAAGGACACTGATTCTGCTAAAGAAAGTTCCAGGCCTGATAGAACATCTGTGTTTTCAAAACGTAGTGCGCAGGCTGCCACATTACAGCACAAGAAGCCAACTTCTAGTGTTGATGCTGAGATTTTAGGTGGATCCACGCTAAGTTCTCAGGCTATGTTGAAACAGGAGGTATCTACAGCATCATCAAAGGGCACTACTTTAAAAAAAGGTGATCGAGTGAAATTCGTTGGTAATGTTCCTTCAACCAGTATATCGCTAACGAATTATCCTTCTAGGGGACCGAGCTATGGCTCCCGGGGAAAAGTTCTTCTTGCTTTTGAAGAAAATGGGTCTTCAAAAATTGGAGTTAGGTTTGATAAATCAATTCCAGATGGCAATGATCTTGGAGGCCTATGTGAGGATGATCGTGGGTTCTTTTGTTCTGCTAATCATTTATTACGAGTTGATGGTTCTGGAGGGGATGACACTGACAAGCTTGCAATAAATGAAATTTTTGAGGTTGCCTCCAATCAGAGTAAAAGTGGTGCGCTAGTGTTGTTCATCAAAGACATAGAGAAGGCAATAGTTGGAAACACAGAAATTTTGAAGACTAAACTTGAAAATTTGCGGCAGAATGTTGTTGTAATTGGCTCGCATACTCAGCCTGACAATCGCAAGGAGAAGACCCACCCTGGTGGCCTTCTGTTTACGAAGTTTGGGAGCAATCAGACTGCACTACTTGATCTTGCATTTCCGGATAACTTCAGTAGGCTTCATGAACGGAGCAAAGAAACCCCCAAAACAATGAAGCAACTTAGTCGTCTTTTCCCCAACAAAGTGACAATACAGCTGCCTCAGGACGAGGCTTTGCTTTCTGATTGGAAGCAGCAATTAGAACGTGACATTGAAACAATGAAAGCTCAGTCAAATGTTGTCAGCATTCGTTCAGTTCTCAACAGGATTAGATTGGATTGCCCTGACCTTGAGACACTTTGCATTAAAGATCAAGCCTTAACCACTGAAAGTGTGGAAAAAGTCATTGGCTGGGCTATAAGCTATCATTTTATGCATTCGTCTGAAGCTTCAATCAAAGACTCTATGCTTGTGATATCTACTGACAGCATTAAGTATGGACTGAACATTCTACAGGGCATTCTAAGTGAAAACAAGAACTTAAAAAAATCACTTAAGGATGTGGTTACTGAGAATGAATTTGAGAAAAAGCTTCTTGCCGATGTTATACCACCCACTGATATTGGGGTCACTTTTGATGACATCGGAGCCTTGGAAAATGTGAAGGACACCTTGAAGGAACTGGTCATGCTTCCTCTTCAAAGGCCTGAATTGTTTTGTAAGGGACAATTGACTAAGCCTTGCAAGGGAATATTACTCTTTGGGCCCCCTGGTACGGGAAAGACAATGCTTGCAAAGGCTGTAGCAACTGAGGCTGGAGCAAATTTCATCAACATTTCAATGTCAAGCATCACTTCAAAGTGGTTTGGTGAAGGAGAGAAGTATGTCAAAGCAGTCTTTTCTCTAGCAAGCAAAATTGCTCCAAGTGTTATTTTTGTTGATGAGGTTGATAGCATGTTAGGAAGACGCGAGAATCCTGGTGAGCATGAGGCTATGCGTAAGATGAAGAATGAGTTTATGGTGAACTGGGATGGTCTGCGTACAAAAGATAGAGAGCGTATACTTGTTCTTGCTGCTACAAATAGGCCATTTGACCTTGACGAGGCTGTTATTAGGAGGCTTCCTCGAAGATTGATGGTTAATTTGCCAGATGCTCTGAACAGAGAAAAAATTCTCAGAGTCATCTTAGCAAAAGAAGATTTGGCACCTGATGTTGAGTTGGAAGCAGTAGCAAATATGACTGATGGATATTCAGGAAGTGACTTAAAGAATCTGTGTGTCACAGCAGCTCAATGTCCAATAAGAGAAATCTTGGAGAAGGAAAAGAAGGAGAAAAGTTTGGCATTGTCTGAGAACAGACCTTTACCTGCATTATGTAGCAGTGCTGACATTCGACCCTTAAAGATGGAAGATTTTAAGTATGCACATGAGCAGGTGTGTGCAAGTGTATCATCGGAGTCAACAAATATGAATGAGCTACTCCAATGGAACGATCTTTATGGAGAAGGCGGATCCAGAAAAATGAGATCTCTGAGCTATTTCATGTAA 3762 0.429 MVETRRSSSSSKRSLSSPPPSNAKRSKVSEDASSTSLPSAEILGQVNESGNESREPEIRPSDLPDADSLKAVDVSDAMLPVKSPTVPVEGEALVSPRSLGETAVEAEKSKSVGAAALGRSKKRPTKSTKSGPKAAWGKLLSQCSQNPHLFMSGLFTVGQGRQCDLWLKDPAASNILCKLRHIERGGSSVALLEVVGGKGAVQVNGRNYQKNSSVILSGGDEVVFSSSGKHAYIFQQLTNNNMTTTGVPSSVSILETQSEPIKGMRIEARSGDSSAVAGASILASLSNLHKDLSLLPPPAKTGENVQQNAEISSVPSGQGDDNVDNEMKDILNNDDPNGVILTEKTVLASSTTANENPSLDSVEMDAGVDADVGKVNGPTYELRPLLRMLAGSSTEFDLSGSISKILEERRDLRELLKDVDPPTILASTRRQAFKESLQEGILSPDDIDVSFESFPYFLSDTTKNVLTASTFIHLKCNGFAKYASDLPSVCPRILLSGPAGSEIYQETLSKALAKHFGARVLIVDSLSLPGGTPPKDTDSAKESSRPDRTSVFSKRSAQAATLQHKKPTSSVDAEILGGSTLSSQAMLKQEVSTASSKGTTLKKGDRVKFVGNVPSTSISLTNYPSRGPSYGSRGKVLLAFEENGSSKIGVRFDKSIPDGNDLGGLCEDDRGFFCSANHLLRVDGSGGDDTDKLAINEIFEVASNQSKSGALVLFIKDIEKAIVGNTEILKTKLENLRQNVVVIGSHTQPDNRKEKTHPGGLLFTKFGSNQTALLDLAFPDNFSRLHERSKETPKTMKQLSRLFPNKVTIQLPQDEALLSDWKQQLERDIETMKAQSNVVSIRSVLNRIRLDCPDLETLCIKDQALTTESVEKVIGWAISYHFMHSSEASIKDSMLVISTDSIKYGLNILQGILSENKNLKKSLKDVVTENEFEKKLLADVIPPTDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDRERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDALNREKILRVILAKEDLAPDVELEAVANMTDGYSGSDLKNLCVTAAQCPIREILEKEKKEKSLALSENRPLPALCSSADIRPLKMEDFKYAHEQVCASVSSESTNMNELLQWNDLYGEGGSRKMRSLSYFM 1253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g3393 1253 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 947 1123 - -
Dere01g3393 1253 ProSitePatterns AAA-protein family signature. 1092 1111 IPR003960 GO:0005524|GO:0016887
Dere01g3393 1253 Pfam AAA+ lid domain 1142 1178 IPR041569 -
Dere01g3393 1253 MobiDBLite consensus disorder prediction 92 134 - -
Dere01g3393 1253 SMART AAA_5 985 1122 IPR003593 GO:0016887
Dere01g3393 1253 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 431 1252 - -
Dere01g3393 1253 MobiDBLite consensus disorder prediction 1 51 - -
Dere01g3393 1253 MobiDBLite consensus disorder prediction 529 571 - -
Dere01g3393 1253 Gene3D - 1121 1215 - -
Dere01g3393 1253 Gene3D - 120 243 - -
Dere01g3393 1253 Gene3D - 947 1227 IPR027417 -
Dere01g3393 1253 CDD RecA-like_ATAD1 952 1118 - -
Dere01g3393 1253 MobiDBLite consensus disorder prediction 550 571 - -
Dere01g3393 1253 MobiDBLite consensus disorder prediction 297 323 - -
Dere01g3393 1253 MobiDBLite consensus disorder prediction 1 77 - -
Dere01g3393 1253 SUPERFAMILY SMAD/FHA domain 143 228 IPR008984 GO:0005515
Dere01g3393 1253 MobiDBLite consensus disorder prediction 300 320 - -
Dere01g3393 1253 MobiDBLite consensus disorder prediction 52 66 - -
Dere01g3393 1253 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 948 1227 IPR027417 -
Dere01g3393 1253 Pfam ATPase family associated with various cellular activities (AAA) 989 1118 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g3393 Dere-ChrDere01 48518734 48529704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g3393 984 1189 Calmodulin-binding Proteins AT3G56690 36.190 1.14e-31 132